Re: [easybuild] 2015b common toolchains

2015-06-19 Thread Christopher Samuel
On 17/06/15 20:50, Kenneth Hoste wrote: > OpenMPI v1.8.5 (note: with 1.8.6 likely to be released very soon, > this may get bumped before the definition is cast into stone) 1.8.6 came out the night before last. :-) -- Christopher SamuelSenior Systems Administrator VLSCI - Victoria

Re: [easybuild] 2015b common toolchains

2015-06-19 Thread Kenneth Hoste
Hi Christopher, On 19/06/15 01:20, Christopher Samuel wrote: On 17/06/15 20:50, Kenneth Hoste wrote: OpenMPI v1.8.5 (note: with 1.8.6 likely to be released very soon, this may get bumped before the definition is cast into stone) 1.8.6 came out the night before last. :-) Yes, I noticed

Re: [easybuild] Easier way of installing R packages

2015-06-19 Thread Riccardo Murri
Hi Ken, all, (Kenneth Hoste, Thu, Jun 18, 2015 at 04:32:27PM +0200:) > We deliberately do not enable 'dependency=True', to ensure we can reproduce > the exact same installation later; if you let R automagically resolve > dependencies and let it pick the most recent version at that time for the > d

Re: [easybuild] 2015b common toolchains

2015-06-19 Thread Martin
Hello, I'm not sure wether it should be part of the toolchain but to me "base tools/libs" should somehow be standardized on. I'm thinking along the lines of xz, bzip and such (I'm more along the lines of: Provide an environment as complete as possible for the users). Most of the time these tools a

Re: [easybuild] 2015b common toolchains

2015-06-19 Thread Ward Poelmans
On Fri, Jun 19, 2015 at 12:05 PM, Martin wrote: > I'm not sure wether it should be part of the toolchain but to me "base > tools/libs" should somehow be standardized on. I'm thinking along the lines > of xz, bzip and such (I'm more along the lines of: Provide an environment as > complete as possib

Re: [easybuild] 2015b common toolchains

2015-06-19 Thread Kenneth Hoste
Hi Martin, On 19/06/15 12:05, Martin wrote: Hello, I'm not sure wether it should be part of the toolchain but to me "base tools/libs" should somehow be standardized on. I'm thinking along the lines of xz, bzip and such (I'm more along the lines of: Provide an environment as complete as possi

Re: [easybuild] 2015b common toolchains

2015-06-19 Thread Martin
The issue seems to be exactly what I'm talking about. I'll take back anything that has any implications for foss/2015b and start confusing people in issue#1689 (once I read up on it) :) On Fri, Jun 19, 2015 at 1:10 PM Kenneth Hoste wrote: > Hi Martin, > > > On 19/06/15 12:05, Martin wrote: > >

Re: [easybuild] Easier way of installing R packages

2015-06-19 Thread sberri
Hi. I had the same problem, and here how I solved. I wrote this recursive function https://github.com/stefanoberri/Rmisc/blob/master/retrievePkgNamesAndVersions.R from an R installation where ggplot2 is installed you run getPkgsTree("ggplot2") this will return the list of package names and ve

[easybuild] openssl-devel, zlib-devel and EB

2015-06-19 Thread Jack Perdue
Howdy all, The whole toolchain/bundle thread has sparked me to express a frustration I've had of late. Lately, the default for EB has been to use the OpenSSL included with the system (via openssl-devel on RHEL). This makes sense in terms of keeping up to date with needed security fixes. Howeve