Re: [easybuild] overwite default sanity check command for PythonPackage easyblock

Thanks that worked! On Mon, Feb 22, 2016 at 11:08 PM, Jack Perdue wrote: > Howdy Niek, > > Try this: > > 1) add the line > > options = {'modulename': 'vcf'} > > 2) remove your "sanity_check_commands" line. > By default, the PythonPackage easyblock will > try to import it (using the name a

Re: [easybuild] overwite default sanity check command for PythonPackage easyblock

Howdy Niek, Try this: 1) add the line options = {'modulename': 'vcf'} 2) remove your "sanity_check_commands" line. By default, the PythonPackage easyblock will try to import it (using the name above) during sanity checking See Biopython (among others) for an example. Jack Perdue

[easybuild] overwite default sanity check command for PythonPackage easyblock

Hi alI, I am trying to install PyVCF (https://pypi.python.org/pypi/PyVCF/0.6.7) which is imported with import vcf instead of import pyvcf The problem I have is that when I use sanity_check_commands = [('python', '-c "import vcf"')] the easyblock PythonPackage still uses pytho

Re: [easybuild] goolf-1.4.10, CentOS 7 and HPCBIOS

Hi John-Paul, On 22/02/16 17:48, John-Paul Robinson wrote: Thanks for the update on the status and thoughts around HPCBIOS. I'm interested in exploring these options. We are in the process of migrating from ROCKS5 (CentOS5) to a platform based on CentOS7. As part of this, we're adopting EasyBu

Re: [easybuild] goolf-1.4.10, CentOS 7 and HPCBIOS

Thanks for the update on the status and thoughts around HPCBIOS. I'm interested in exploring these options. We are in the process of migrating from ROCKS5 (CentOS5) to a platform based on CentOS7. As part of this, we're adopting EasyBuild to manage builds. A large part of our community is bioinf