Re: [easybuild] R-3.5.1-foss-2018b.eb - checksum error for mgcv_1.8-24.tar.gz

2018-11-19 Thread Kenneth Hoste
On 20/11/2018 07:43, Loris Bennett wrote: Yes, I can see that --ignore-checksums isn't ideal, particularly with something like R with over 600 packages. It might be useful to be able to configure how many failing checksums can be ignored before the install aborts. Maybe support only ignoring

Re: [easybuild] R-3.5.1-foss-2018b.eb - checksum error for mgcv_1.8-24.tar.gz

2018-11-19 Thread Loris Bennett
Yes, I can see that --ignore-checksums isn't ideal, particularly with something like R with over 600 packages. It might be useful to be able to configure how many failing checksums can be ignored before the install aborts. Kenneth Hoste writes: > Just want to mention that you can ignore this

Re: [easybuild] Cannot find dependency with --minimal-toolchains and --hidden-deps

2018-11-19 Thread Andreas Hilboll
Thanks, Kenneth -- One thing you also need to take into account is that the tcsh-6.20.00-GCCcore-7.3.0.eb easyconfig must be available in your robot search path ("eb --search tcsh-6.20.00-GCCcore-7.3.0" should fine it). That's a known problem which we haven't gotten around to fixing yet,

Re: [easybuild] Cannot find dependency with --minimal-toolchains and --hidden-deps

2018-11-19 Thread Kenneth Hoste
Dear Andreas, On 19/11/2018 16:09, Andreas Hilboll wrote: Hi, I'm trying to build WRF-4.0.1 for foss-2018b.  My easyconfig has (among other settings)    toolchain = {'name': 'foss', 'version': '2018b'}    builddependencies = [('tcsh', '6.20.00')]    dependencies = [    ('JasPer',

Re: [easybuild] R-3.5.1-foss-2018b.eb - checksum error for mgcv_1.8-24.tar.gz

2018-11-19 Thread Kenneth Hoste
Just want to mention that you can ignore this using "eb --ignore-checksums", but that's not recommended unless you're confident that you know what is causing the difference in checksum. On 19/11/2018 16:11, Loris Bennett wrote: Thanks, Alan. Next time I'll check the list of commits before

Re: [easybuild] Modules not shown by 'module av'

2018-11-19 Thread Loris Bennett
Hi Alan, Yes, you're right, I can load the module even though 'module av' doesn't show it. Using --ignore_cache works but is very slow as is LMOD_RC=/home/loris/shared/apps/lmod/lmod/libexec/../init/lmodrc.lua module av But I haven't really understood Lmod's caching mechanism yet and whether

Re: [easybuild] R-3.5.1-foss-2018b.eb - checksum error for mgcv_1.8-24.tar.gz

2018-11-19 Thread Loris Bennett
Thanks, Alan. Next time I'll check the list of commits before writing to the list. Cheers, Loris Alan O'Cais writes: > This has been fixed and will appear in the next release, see > https://github.com/easybuilders/easybuild-easyconfigs/pull/7122 > > Alan > > On Mon, 19 Nov 2018 at 15:33,

[easybuild] Cannot find dependency with --minimal-toolchains and --hidden-deps

2018-11-19 Thread Andreas Hilboll
Hi, I'm trying to build WRF-4.0.1 for foss-2018b. My easyconfig has (among other settings) toolchain = {'name': 'foss', 'version': '2018b'} builddependencies = [('tcsh', '6.20.00')] dependencies = [ ('JasPer', '2.0.14'), ('netCDF', '4.6.1'), ('netCDF-Fortran',

Re: [easybuild] Modules not shown by 'module av'

2018-11-19 Thread Alan O'Cais
Hi Loris, Probably your lmod cache is just out of date. Have you tried to actually load the module? Try module --ignore_cache avail On Mon, 19 Nov 2018 at 15:47, Loris Bennett mailto:loris.benn...@fu-berlin.de>> wrote: Hi, This maybe more of an Lmod problem. I have built two toolchains:

Re: [easybuild] R-3.5.1-foss-2018b.eb - checksum error for mgcv_1.8-24.tar.gz

2018-11-19 Thread Alan O'Cais
This has been fixed and will appear in the next release, see https://github.com/easybuilders/easybuild-easyconfigs/pull/7122 Alan On Mon, 19 Nov 2018 at 15:33, Loris Bennett mailto:loris.benn...@fu-berlin.de>> wrote: Hi, The sha256 checksum for the R extension mgcv in R-3.5.1-foss-2018b.eb

[easybuild] Modules not shown by 'module av'

2018-11-19 Thread Loris Bennett
Hi, This maybe more of an Lmod problem. I have built two toolchains: [loris@admin ~]$ ll ~/shared/modules/toolchain/foss/ total 0 lrwxrwxrwx 1 loris loris 53 Nov 15 11:44 2018a.lua -> /home/loris/shared/modules/all/foss/2018a.lua lrwxrwxrwx 1 loris loris 53 Nov 19 12:40 2018b.lua ->

[easybuild] R-3.5.1-foss-2018b.eb - checksum error for mgcv_1.8-24.tar.gz

2018-11-19 Thread Loris Bennett
Hi, The sha256 checksum for the R extension mgcv in R-3.5.1-foss-2018b.eb seems to be incorrect: == 2018-11-19 15:13:36,681 easyblock.py:517 INFO md5 checksum for /home/loris/shared/sources/r/R/extensions/mgcv_1.8-24.tar.gz: 45d4690766e29210a01b70614c344adc == 2018-11-19 15:13:36,683