Re: [O] using org-refile to sort research notes?

2014-05-05 Thread Jay Dixit
Richard and Alan, Thanks for the feedback. It looks like this is turning into a larger discussion of how to organize a workflow for writing a book. Which is great - I could use some insight. My problem is I have dozens of disparate files, each created in a different moment of inspiration and each

Re: [O] Keyboard macro and org-mode

2014-05-05 Thread Suvayu Ali
On Mon, May 05, 2014 at 02:47:23PM +1000, Alan Tyree wrote: I was trying to build a keyboard macro to remove targets of the form sec:some_title When in org-mode, emacs hangs after C-s . If I turn off org mode and use a simple text mode, the keyboard macro works ok. Is this a bug or am I

[O] Export Agenda to Google Calendar ICS Format

2014-05-05 Thread Tory S. Anderson
Cross-posted from http://stackoverflow.com/questions/23463962/emacs-export-calendar-bad-timezone-format-in-ics Using orgmode I export my agenda to an ics file, upload it to my site, and import it into Google calendar. This seems like an easy ideal solution, but when I check the calendar I find

Re: [O] [RFC] Rewrite indentation functions

2014-05-05 Thread Nicolas Goaziou
Hello, Eric Abrahamsen e...@ericabrahamsen.net writes: One last thing! In the course of this I also noticed that, in a buffer that contains a broken property drawer, you can't set properties on *any* other heading. When `org-buffer-property-keys' goes looking for valid keys used elsewhere in

Re: [O] using org-refile to sort research notes?

2014-05-05 Thread Leonard Avery Randall
Hi Jay, Regarding org-refile: I just keep all my current projects in my agenda list. I then set up org-refile-targets to (org-agenda-files :maxlevel . 6). This allows me to quickly refile a subtree to any subtree in any project that I am currently working on. (I use this frequently to

[O] Bibliography woes!

2014-05-05 Thread Sharon Kimble
I'm having no success in getting the bibliography to display in my document, so these are my relevant settings - ╭ │#+LaTeX_HEADER: \usepackage{biblatex} │#+LaTeX_HEADER: \bibliography{/home/boudiccas/.emacs.d/research/references.bib} │#+LaTeX_HEADER: \bibliography{references} ╰ and I'm

[O] Change default latex packages

2014-05-05 Thread Roger Mason
Hello, How can I change the default packages that are used in LaTeX export? I'm running Org-mode version 8.2.6 (release_8.2.6-937-g60502a). Thanks, Roger

Re: [O] Bibliography woes!

2014-05-05 Thread Vikas Rawal
I'm having no success in getting the bibliography to display in my document, so these are my relevant settings - ╭ │#+LaTeX_HEADER: \usepackage{biblatex} │#+LaTeX_HEADER: \bibliography{/home/boudiccas/.emacs.d/research/references.bib} │#+LaTeX_HEADER: \bibliography{references} ╰

[O] [BUG] [babel] in :eval never with :session

2014-05-05 Thread Rainer M Krug
The error is back: When one header in a subtree which has the header argument :eval never has the same name as in a following subtree which should be evaluated on export, the second subtree is not exported. When the name of the header is changed, the subtree is exported as expected.

Re: [O] Bibliography woes!

2014-05-05 Thread Leonard Avery Randall
Hi, Sharon Kimble wrote: But page 3 of what? input line 139 of what? Page 3 of the PDF and input line 139 of the .tex file. It all looks okay to me, except I cant see what the latex warnings relate to. Any ideas folks please? The most likely problem is that you have you have not

[O] Folding in iESS R buffer

2014-05-05 Thread Rainer M Krug
Hi I have modified the variable transfer in ob-R.el so that the variable transfer code is enclosed as can be seen below. My idea is that I can fold the R output so that the variable transfer is collapsed. I understand that I can use one of the org-outside-org minor modes [1] (presumibly

[O] Follow up on bug

2014-05-05 Thread Leonard Avery Randall
Hi all, I just wanted to follow up on a bug that I posted. It was caused by a series of changes to org-insert-headline. My original post was buried in a particularly long exchange (http://thread.gmane.org/gmane.emacs.orgmode/84564/focus=85798), so it may have been missed. The problem is that

Re: [O] Including headlines in export with specific tags AND no tags?

2014-05-05 Thread Rehan Iftikhar
Hi Leonard Thanks for the tip. I am exporting via Emacs's batch mode so I wrote a short elisp function: (defun org-export-non-greedy-select-tags (lst) Workaround to export a .org file with headlines that contain tags in `lst` AND headlines that have no tags (let (all-buffer-tags) (setq

[O] Non-scheduled repeating tasks

2014-05-05 Thread Albin Stjerna
Hi, I've been thinking about how to integrate tasks which are to some extent tracked elsewhere into my org-mode workflow, such as for example read N chapter of book A or watch K video lectures at X. I'd like a way to describe in org-mode that a task should be completed a number of times, and

Re: [O] Bibliography woes!

2014-05-05 Thread Sharon Kimble
Leonard Avery Randall leonard.a.rand...@gmail.com writes: Hi, Sharon Kimble wrote: But page 3 of what? input line 139 of what? Page 3 of the PDF and input line 139 of the .tex file. It all looks okay to me, except I cant see what the latex warnings relate to. Any

Re: [O] Change default latex packages

2014-05-05 Thread John Kitchin
I do not know if this is the best practice, but I do it like this. (setq org-latex-default-packages-alist '((AUTO inputenc t) ( lmodern nil) (T1 fontenc t) ( fixltx2e nil) ;( charter nil) ;; a decent font ;(expert mathdesign nil) ( graphicx t) ( longtable nil)

Re: [O] exporting α/β to latex/pdf

2014-05-05 Thread Suvayu Ali
Hi Nick, On Sun, May 04, 2014 at 06:14:34PM -0400, Nick Dokos wrote: Suvayu Ali fatkasuvayu+li...@gmail.com writes: On Sun, May 04, 2014 at 04:13:45PM +0100, Sharon Kimble wrote: I have these two symbols showing in my org-mode buffer with no problems ╭ │ alpha (ER-α) and beta

Re: [O] Bibliography woes!

2014-05-05 Thread Vikas Rawal
Any ideas please folks, or some code to try please? I use #+LATEX_HEADER: \usepackage[citestyle=authoryear-icomp,bibstyle=authoryear,hyperref=true,backref=true,maxcitenames=3,url=true,backend=biber,natbib=true]{biblatex} Can you try this, and if it works, modify as you prefer. Also, as

Re: [O] Bibliography woes!

2014-05-05 Thread Leonard Avery Randall
Hi Sharon, Your setup seems to only call bibtex once. I find that with biblatex this is usually not enough to resolve references. I would call bibtex a second time after the second run of biblatex. All best, Leonard

[O] Bug with subscripts and superscripts

2014-05-05 Thread Hugo M
Hi. I think there's a bug in org-mode, related with subscripts and superscripts. This is the problem: pastie.org/9142947 And here's the related documentation page: http://www.gnu.org/software/emacs/manual/html_node/org/Subscripts-and-superscripts.html To avoid interpretation as raised or

Re: [O] Change default latex packages

2014-05-05 Thread Eric S Fraga
On Monday, 5 May 2014 at 09:43, Roger Mason wrote: Hello, How can I change the default packages that are used in LaTeX export? If you want to add some to the default, you can modify org-latex-packages-alist. If you want to remove some from the default list (not recommended), check out

Re: [O] First attempt at exporting to PDF.

2014-05-05 Thread Eric S Fraga
On Saturday, 3 May 2014 at 16:55, Sharon Kimble wrote: [...] Secondly, none of my bibliographic references show in the pdf except as ?, although I cite them like this males have more testosterone \cite{6}. which correlates with this - @Article{, Your problem (both in this email and in the

Re: [O] exporting α/β to latex/pdf

2014-05-05 Thread Clément B.
The *easiest* solution is to just say \alpha and \beta in the org file instead of α and β. But biting the bullet and adopting XeTeX or LuaTeX is probably the *best* way to go (he says without ever having used either...) For those who stick with pdflatex, you can also use α directly in the org

Re: [O] Seeking advice on a worg contribution

2014-05-05 Thread Eric S Fraga
On Sunday, 4 May 2014 at 09:38, James Harkins wrote: I finally finished a draft (attached, and not carefully proofread yet) of a new worg page to outline what I had to do for a big Beamer publishing project. Interesting and very useful document. Thanks! Could somebody look it over and

Re: [O] Bibliography woes!

2014-05-05 Thread Sharon Kimble
Vikas Rawal vikasli...@agrarianresearch.org writes: Any ideas please folks, or some code to try please? I use #+LATEX_HEADER: \usepackage

[O] Using KOMA and Memoir?

2014-05-05 Thread Martin Schöön
I have tried to get KOMA and Memoir work in Org-mode. In short: I only get error messages telling me they are unknown LaTeX classes. I have looked in the archives with little success. All I find is a KOMA letter thing. I have looked all over the web (no, not really) but with little success. I am

Re: [O] Change default latex packages

2014-05-05 Thread Roger Mason
Thanks John, I now have what I want. Roger

Re: [O] Change default latex packages

2014-05-05 Thread Roger Mason
Thanks Eric. Filed away for future reference. Roger

[O] enumerate in LaTeX export

2014-05-05 Thread Roger Mason
Hello, I don't understand why this text: === case. The University requests that all medical notes be on letterhead, be signed by the physician and include details on the following: 1. confirmation of the specific dates on which the student visited the

Re: [O] enumerate in LaTeX export

2014-05-05 Thread Eric S Fraga
On Monday, 5 May 2014 at 15:33, Roger Mason wrote: Hello, I don't understand why this text: === case. The University requests that all medical notes be on letterhead, be signed by the physician and include details on the following: 1. confirmation of

Re: [O] Bibliography woes!

2014-05-05 Thread Eric S Fraga
On Monday, 5 May 2014 at 18:08, Sharon Kimble wrote: [...] How do I do it from the command-line please? Using what commands? I can do it from inside org-mode, and I've created a test file and bib references, details now. Sharon, have you not seen my other email? Your problem is the actual

Re: [O] Using KOMA and Memoir?

2014-05-05 Thread Eric S Fraga
On Monday, 5 May 2014 at 19:36, Martin Schöön wrote: I have tried to get KOMA and Memoir work in Org-mode. In short: I only get error messages telling me they are unknown LaTeX classes. It would help to know what you have actually tried. I have the following in my org customisation files:

Re: [O] enumerate in LaTeX export

2014-05-05 Thread Grant Rettke
Thanks for sharing that. I've been letting long-lines wrap so that they are exported correctly. Not the worst solution what you describe is nicer. Grant Rettke | AAAS, ACM, ASA, FSF, IEEE, SIAM, Sigma Xi gret...@acm.org | http://www.wisdomandwonder.com/ “Wisdom begins in wonder.” --Socrates ((λ

Re: [O] enumerate in LaTeX export

2014-05-05 Thread Roger Mason
Many thanks, Eric. That did indeed fix the problem. Roger

Re: [O] exporting α/β to latex/pdf

2014-05-05 Thread Grant Rettke
Your example is quite motivating. With so many LaTeX sitting around its been hard to justify switching to the seemingly awesome XeTeX and LuaTeX despite the niceties. Being able to just do Unicode though... very nice especially from Org to TeX! Grant Rettke | AAAS, ACM, ASA, FSF, IEEE, SIAM,

Re: [O] Using KOMA and Memoir?

2014-05-05 Thread Martin Schöön
On 5 May 2014 20:31, Eric S Fraga e.fr...@ucl.ac.uk wrote: On Monday, 5 May 2014 at 19:36, Martin Schöön wrote: I have tried to get KOMA and Memoir work in Org-mode. In short: I only get error messages telling me they are unknown LaTeX classes. It would help to know what you have

[O] epstopdf dependency for ob-lilypond

2014-05-05 Thread Thomas Morgan
Org mode hackers, I'd like to suggest that epstopdf (or the containing package, which is texlive-font-utils on Debian) be listed as a dependency for Org-Babel LilyPond. Without epstopdf, the results of evaluating LilyPond code blocks appear in an exported PDF as boxes containing the text

Re: [O] Export to iCalendar only not DONE, scheduled tasks?

2014-05-05 Thread Arun Persaud
Hi I've been searching round the manual, and blogs, to find a way to do this. I want to export all of the scheduled/deadline tasks that are not in a DONE state to an iCalendar file. Can this be done? pretty sure this can be done. I export only events to an ics file that have a start and

Re: [O] Export Agenda to Google Calendar ICS Format

2014-05-05 Thread Arun Persaud
Hi On 05/05/2014 02:24 AM, Tory S. Anderson wrote: Cross-posted from http://stackoverflow.com/questions/23463962/emacs-export-calendar-bad-timezone-format-in-ics Using orgmode I export my agenda to an ics file, upload it to my site, and import it into Google calendar. This seems like an

Re: [O] Keyboard macro and org-mode

2014-05-05 Thread Suvayu Ali
Hi Alan, You forgot to cc the list! On Tue, May 06, 2014 at 05:19:05AM +1000, Alan Tyree wrote: Can't do it since I could never get past the first step of the macro. It was intended to be a dead simple throw away: Search for ssec: (this is where emacs hangs when defining the macro) Go

Re: [O] Bibliography woes!

2014-05-05 Thread Sharon Kimble
Eric S Fraga e.fr...@ucl.ac.uk writes: On Monday, 5 May 2014 at 18:08, Sharon Kimble wrote: [...] How do I do it from the command-line please? Using what commands? I can do it from inside org-mode, and I've created a test file and bib references, details now. Sharon, have you not seen

Re: [O] Bibliography woes!

2014-05-05 Thread Leonard Avery Randall
Hi, As Henry just noted, one of your main problem is your bibtex key. It should not contain spaces, commas, backslashes, semicolons, or other special characters that might mess up the syntax of the bibtex file. A common convention is to use author:year or if you have many articles by the same

Re: [O] Bibliography woes!

2014-05-05 Thread Ken Mankoff
On 2014-05-05 at 19:39, John Hendy wrote: If this works, someone can chime in regarding how to modify Org so that it will run the necessary biber/biblatex commands so you don't have to jump to a command line every time. Or perhaps that's a one time thing -- maybe as long as biber generates

Re: [O] Seeking advice on a worg contribution

2014-05-05 Thread James Harkins
On Tuesday, May 6, 2014 1:04:38 AM HKT, Eric S Fraga wrote: On Sunday, 4 May 2014 at 09:38, James Harkins wrote: I finally finished a draft (attached, and not carefully proofread yet) of a new worg page to outline what I had to do for a big Beamer publishing project. Interesting and very

Re: [O] exporting α/β to latex/pdf

2014-05-05 Thread Rustom Mody
Suvayu said: The easiest solution is to use a modern TeX engine like XeTeX or LuaTeX along with a font with the required glyphs. I personally use XeTeX with Linux libertine fonts. You can find my setup here: https://github.com/suvayu/.emacs.d/blob/master/org-mode-config.el#L176 Hi Suvayu

[O] bug#17416: insecure temp files in ob-screen.el

2014-05-05 Thread Glenn Morris
Package: emacs,org-mode Version: 24.3.90 Severity: important Tags: security org-babel-screen-session-write-temp-file and org-babel-screen-test seem to use predictable temp-file names, which is a security issue. Using `make-temp-file', or if the file names really need to be predictable, something