Re: [O] ECM for: issues with publishing to LaTeX using #INCLUDE

2015-06-18 Thread Robert Klein
On Thu, 18 Jun 2015 09:55:16 +0200 Nicolas Goaziou m...@nicolasgoaziou.fr wrote: Hello, thank you very much for your effort! I boiled it down further and now don't even need an #include to see this issues. Using the same .emacs as in the earlier mail and having three org files 1.org, 2.org,

Re: [O] helm-bibtex questions

2015-06-18 Thread Xebar Saram
Hi Titus and thx so much for the answers! i will in the future use the github page to make requests. The number of matches will be displayed in the mode line. i see that now thx! :) the problem was(is) that its colored black on my black modline BG which makes it invisible ;-) i assume thats an

Re: [O] [feature request] org-capture-window-setup to stop capture window taking up whole frame

2015-06-18 Thread Xebar Saram
thx again Alan i do get an error if i eval (org-capture nil t) the error is: Debugger entered--Lisp error: (error No capture template referred to by \t\ keys) signal(error (No capture template referred to by \t\ keys)) error(No capture template referred to by \%s\ keys t)

Re: [O] [feature request] org-capture-window-setup to stop capture window taking up whole frame

2015-06-18 Thread Alan Schmitt
On 2015-06-18 13:16, Xebar Saram zelt...@gmail.com writes: Hi Alan your code seems very intersting and i have been looking for something like this for a while. yet for me it opens a new frame without org capture. i use linux (arch) and put in the following code. please note that when i

Re: [O] Emacs/ESS/org freezes/hangs on big data/ RAM(~256GB) processes when run in org/babel

2015-06-18 Thread Xebar Saram
Thx Chuck this sounds great. could you perhaps point us to some documentation on this, or perhpas consider sharing a detailed overview of your workflow? this seems it could really fit my needs. thx so much in advance Z On Thu, Jun 18, 2015 at 6:17 AM, Charles C. Berry ccbe...@ucsd.edu wrote:

Re: [O] Emacs/ESS/org freezes/hangs on big data/ RAM(~256GB) processes when run in org/babel

2015-06-18 Thread Rainer M Krug
Charles C. Berry ccbe...@ucsd.edu writes: On Wed, 17 Jun 2015, William Denton wrote: On 17 June 2015, Xebar Saram wrote: I do alot of modeling work that involves using huge datasets and run process intensive R processes (such as complex mixed models, Gamms etc). in R studio all works well

Re: [O] org version numbers in file - WAS: Tangling takes long - profiling and calling R

2015-06-18 Thread Rainer M Krug
Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: Yes - that's true. But who of the longer org users reads the manual of features they use regularly? Ah well. I turned 3 `mapcar' calls into a single one. It should, hopefully improve speed in your case

Re: [O] org version numbers in file - WAS: Tangling takes long - profiling and calling R

2015-06-18 Thread Nicolas Goaziou
Rainer M Krug rai...@krugs.de writes: Nicolas Goaziou m...@nicolasgoaziou.fr writes: Rainer M Krug rai...@krugs.de writes: Yes - that's true. But who of the longer org users reads the manual of features they use regularly? Ah well. I turned 3 `mapcar' calls into a single one. It should,

Re: [O] [feature request] org-capture-window-setup to stop capture window taking up whole frame

2015-06-18 Thread Xebar Saram
Hi Alan your code seems very intersting and i have been looking for something like this for a while. yet for me it opens a new frame without org capture. i use linux (arch) and put in the following code. please note that when i evaled your code it said: `flet' is an obsolete macro (as of 24.3);

[O] no org-export-to-html-and-open since distribution switch

2015-06-18 Thread Sven Ehret
Hi List, since I have switched distributions from Mint to Arch, I have lost one of my most-loved Org features: Export to HTML and open. When I choose to export something, I type C-c C-e C-s h o as I usually do. But now the HTML opens in my agenda buffer, and not in my browser anymore. When I

[O] no org-export-to-html-and-open since distribution switch

2015-06-18 Thread Sven Ehret
Hi List, since I have switched distributions from Mint to Arch, I have lost one of my most-loved Org features: Export to HTML and open. When I choose to export something, I type C-c C-e C-s h o as I usually do. But now the HTML opens in my agenda buffer, and not in my browser anymore. When I

Re: [O] Why navigating in Org mode is so slow in overview mode?

2015-06-18 Thread Qiang Fang
I found it linum mode that slows all things down. Thank you for the help! Qiang On Wed, Jun 17, 2015 at 3:51 AM, Nicolas Goaziou m...@nicolasgoaziou.fr wrote: Hello, Q godbles...@gmail.com writes: I am view this file http://doc.norang.ca/org-mode.org It's a prettey long document,

Re: [O] no org-export-to-html-and-open since distribution switch

2015-06-18 Thread Rasmus
Hi, What is your WM/DM? If it's Gnome that might be the reason. There's an thread a couple of weeks back with a workaround for Gnome. Rasmus -- C is for Cookie

Re: [O] org version numbers in file - WAS: Tangling takes long - profiling and calling R

2015-06-18 Thread Detlef Steuer
Am Thu, 18 Jun 2015 15:25:57 +0200 schrieb Rainer M Krug rai...@krugs.de: In the spirit of reproducibility, I would at least suggest to introduce a function which inserts an argument #+ORG_FILE_VERSION: TheActualOrgVersionProbablyWithGitHash if it does not exist, and if it exist, updates

[O] no org-export-to-html-and-open since distribution switch

2015-06-18 Thread Sven Ehret
Hi List, since I have switched distributions from Mint to Arch, I have lost one of my most-loved Org features: Export to HTML and open. When I choose to export something, I type C-c C-e C-s h o as I usually do. But now the HTML opens in my agenda buffer, and not in my browser anymore. When I

Re: [O] ox-koma-letter: how to use @@LaTeX:@@ specific commands in #+ directives

2015-06-18 Thread Nicolas Goaziou
Hello, Rasmus ras...@gmx.us writes: Nicolas: are there any of the keywords in the patch that shouldn't be parsed? I don't think so. Notwithstanding AUTHOR, which clearly is an overlook (ox.el parses it), I wonder if it is a net gain, tho. In my experience, these values are mostly constituted

Re: [O] [feature request] org-capture-window-setup to stop capture window taking up whole frame

2015-06-18 Thread Alan Schmitt
On 2015-06-18 13:52, Xebar Saram zelt...@gmail.com writes: thx again Alan i do get an error if i eval (org-capture nil t) the error is: Debugger entered--Lisp error: (error No capture template referred to by \t\ keys) Yes: you need to define a capture template with that key. Here are my

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Kaushal
Nope, it doesn't :) Screencap of pdf export: http://i.imgur.com/KuLHKNd.png On Thu, Jun 18, 2015 at 3:54 AM Marcin Borkowski mb...@mbork.pl wrote: On 2015-06-18, at 05:19, Kaushal kaushal.m...@gmail.com wrote: The solution is simpler than you think; you simply need to add ZERO WIDTH

[O] another example of org being slow, with some analysis

2015-06-18 Thread Eric S Fraga
Hello, there have been a few threads recently mentioning poor performance. Although some of these have been resolved (e.g. the use of =linum=), I wonder if I could add a data point. I have a medium (for me) sized (385 kB) org file with all of my tasks in a date-tree structure. One of the tasks

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Steven Arntson
Thank you very much! -steven Kaushal kaushal.m...@gmail.com writes: A quick google search comes up this these: http://tex.stackexchange.com/questions/83440/inputenc-error-unicode-char-u8-not-set-up-for-use-with-latex

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Kaushal
A quick google search comes up this these: http://tex.stackexchange.com/questions/83440/inputenc-error-unicode-char-u8-not-set-up-for-use-with-latex http://tex.stackexchange.com/questions/4268/inputenc-error-unicode-char-u8-error-while-trying-to-write-a-degree-symbol Based on those solutions,

Re: [O] Bug: Org timeline does not work [8.3beta (release_8.3beta-1229-ge900eb @ /home/dominik/.emacs.d/org-mode/lisp/)]

2015-06-18 Thread Nick Dokos
Dominik Schrempf dominik.schre...@gmail.com writes: Hello, if I want to create a timeline of an arbritrary org file, I get the following error: Symbol's function is void: org-timeline This function is defined in org-agenda.el[c]. So the question is: is org-agenda loaded? If (featurep

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Myles English
Marcin Borkowski writes: On 2015-06-18, at 05:19, Kaushal kaushal.m...@gmail.com wrote: The solution is simpler than you think; you simply need to add ZERO WIDTH SPACE unicode char between / and (beginning) and and / (end). Thanks for your detailed answer Kaushal. I hadn't heard of a

Re: [O] searching for csv utilities

2015-06-18 Thread Jude DaShiell
I spent time looking for vmode in info org using a regular expression search and couldn't find it either. That capability is probably in R though it may be under another name. I have emacs-ess package and R installed on this system though haven't used them yet. I also found sbcl so if it

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Marcin Borkowski
On 2015-06-18, at 18:02, Kaushal kaushal.m...@gmail.com wrote: A quick google search comes up this these: http://tex.stackexchange.com/questions/83440/inputenc-error-unicode-char-u8-not-set-up-for-use-with-latex

Re: [O] helm-bibtex questions

2015-06-18 Thread Titus von der Malsburg
On 2015-06-18 Thu 04:32, Xebar Saram wrote: Hi Titus and thx so much for the answers! i will in the future use the github page to make requests. The number of matches will be displayed in the mode line. i see that now thx! :) the problem was(is) that its colored black on my black modline

Re: [O] Emacs/ESS/org freezes/hangs on big data/ RAM(~256GB) processes when run in org/babel

2015-06-18 Thread Charles C. Berry
On Thu, 18 Jun 2015, Xebar Saram wrote: Thx Chuck this sounds great. could you perhaps point us to some documentation on this, or perhpas consider sharing a detailed overview of your workflow? this seems it could really fit my needs. Start with Sections 1-3 of ox-ravel.org for basic info.

Re: [O] ECM for: issues with publishing to LaTeX using #INCLUDE

2015-06-18 Thread Robert Klein
Hello, now I've narrowed the org file(s) down to --- snip --- #+TITLE: Frequently Asked Questions #+name: docinfo #+begin_src elisp :exports none (let ((props (org-export-get-environment))) (concat #+LaTeX_HEADER: \\newcommand{\\myTitle}{ (org-element-interpret-data

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Rasmus
Marcin Borkowski mb...@mbork.pl writes: On 2015-06-18, at 18:02, Kaushal kaushal.m...@gmail.com wrote: A quick google search comes up this these: http://tex.stackexchange.com/questions/83440/inputenc-error-unicode-char-u8-not-set-up-for-use-with-latex

Re: [O] another example of org being slow, with some analysis

2015-06-18 Thread Nick Dokos
Eric S Fraga e.fr...@ucl.ac.uk writes: The output of the ELP profiler is here: ... org-goto-line 104 10.761145733 0.1034725551 .. org-current-line66 6.8422078910 0.1036698165 ... I find these two difficult to explain: they account for the

Re: [O] Emacs/ESS/org freezes/hangs on big data/ RAM(~256GB) processes when run in org/babel

2015-06-18 Thread Charles C. Berry
On Thu, 18 Jun 2015, Rainer M Krug wrote: Charles C. Berry ccbe...@ucsd.edu writes: On Wed, 17 Jun 2015, William Denton wrote: On 17 June 2015, Xebar Saram wrote: I do alot of modeling work that involves using huge datasets and run process intensive R processes (such as complex mixed

Re: [O] another example of org being slow, with some analysis

2015-06-18 Thread Ivan Andrus
I’m jumping into the middle of the thread, but have you tried (setq cache-long-scans nil) That solved some performance issues for me. I can’t remember where I got the advice. -Ivan On Jun 18, 2015, at 10:28 AM, Eric S Fraga e.fr...@ucl.ac.uk wrote: Hello, there have been a few threads

Re: [O] ox-koma-letter: how to use @@LaTeX:@@ specific commands in #+ directives

2015-06-18 Thread Rasmus
Eric S Fraga e.fr...@ucl.ac.uk writes: with this patch, exporting to koma-letter doesn't work for me. I've not investigated properly yet but thought I'd give you a heads up on this. Thanks. I don't really know where exactly it breaks with a minimal example. It works on my PC. Anyway,

Re: [O] Emacs/ESS/org freezes/hangs on big data/ RAM(~256GB) processes when run in org/babel

2015-06-18 Thread Andreas Leha
Hi Chuck, [snip: all context about workflows for R projects] For example, the bioConductor package geneRxCluster [1] comes from an Org mode document that contains the C and R code as src blocks and a subtree with the vignette (Using geneRxCluster) that analyzes data, produces graphics, etc.

[O] Column formats for columnview dynamic block

2015-06-18 Thread Joon Ro
Hi, I use columnview dynamic block to generate a table so I can export it.However, it does not obey the #+COLUMNS: settings that I have in the org file.Is there any way to make it obey the settings? I'm exporting the table for LaTeX and I want to control the number of digits that it shows.

Re: [O] org-cite and org-citeproc

2015-06-18 Thread Richard Lawrence
Hi Matt, Matt Price mopto...@gmail.com writes: I'm wondering what kind of work is required to make use of org-cite and org-citeproc at present. In particular, I'm wondering what kinds of changes I'll need to make to my current setup, and whether it's worthwhile to use my ultra-slow coding

Re: [O] Column formats for columnview dynamic block

2015-06-18 Thread Joon Ro
I solved this with providing 'printf' format specifiers (http://orgmode.org/org.html#Formula-syntax-for-Calc). I wasn't aware of the the formatting capability - awesome.From: joon...@outlook.com To: emacs-orgmode@gnu.org Date: Thu, 18 Jun 2015 15:27:33 -0700 Subject: [O] Column formats for

Re: [O] Links

2015-06-18 Thread Suvayu Ali
On Wed, Jun 17, 2015 at 11:47:38AM +0200, Nicolas Goaziou wrote: [... description of the issues trimmed ...] Although, you still have to handle the ambiguous case for existing Org files. Unless this double maintenance is cumbersome, I would vote for introducing such a scheme. The

Re: [O] issues with publishing to LaTeX using #INCLUDE

2015-06-18 Thread Robert Klein
Update: it happens only with org-mode master, not with maint. When I delete the elisp (and its call) at the beginning of the #INCLUDEd file everything works Ok. In the failing export already the exported \documentclass is wrong; it says `article' instead of `scrartcl' I use. It seems the

[O] ECM for: issues with publishing to LaTeX using #INCLUDE

2015-06-18 Thread Robert Klein
Attached an ECM: .femacs is the .emacs used. The files 1.org, 2.org, and 3.org are in the directory ~/ot mpip-settings.org is in ~/ot/include The file exported first exports Ok, the others don't. A diff of the export for the ECM (3.org exported Ok, 2.org and 1.org not): --- snip --- --- 3.tex

[O] Bug: Org timeline does not work [8.3beta (release_8.3beta-1229-ge900eb @ /home/dominik/.emacs.d/org-mode/lisp/)]

2015-06-18 Thread Dominik Schrempf
Hello, if I want to create a timeline of an arbritrary org file, I get the following error: Symbol's function is void: org-timeline Best wishes, Dominik Emacs : GNU Emacs 24.5.1 (x86_64-unknown-linux-gnu, GTK+ Version 3.16.2) of 2015-04-20 on bitzer.hoetzel.info Package: Org-mode version

Re: [O] ECM for: issues with publishing to LaTeX using #INCLUDE

2015-06-18 Thread Robert Klein
On Thu, 18 Jun 2015 09:15:50 +0200 Robert Klein rokl...@roklein.de wrote: The file exported first exports Ok, the others don't. Sorry, the file _published_ first exports Ok, the others not. For the ECM I export w/ org-publish-project. Best regards Robert

Re: [O] allow italic quote marks? org-emphasis-regexp-components

2015-06-18 Thread Marcin Borkowski
On 2015-06-18, at 05:19, Kaushal kaushal.m...@gmail.com wrote: The solution is simpler than you think; you simply need to add ZERO WIDTH SPACE unicode char between / and (beginning) and and / (end). Won't it break the LaTeX export? Best, -- Marcin Borkowski

Re: [O] org version numbers in file - WAS: Tangling takes long - profiling and calling R

2015-06-18 Thread Nicolas Goaziou
Rainer M Krug rai...@krugs.de writes: Yes - that's true. But who of the longer org users reads the manual of features they use regularly? Ah well. I turned 3 `mapcar' calls into a single one. It should, hopefully improve speed in your case (could you confirm it). Also, I suggest to signal the

Re: [O] ox-koma-letter: how to use @@LaTeX:@@ specific commands in #+ directives

2015-06-18 Thread Eric S Fraga
On Thursday, 18 Jun 2015 at 00:03, Nicolas Goaziou wrote: [...] I cannot reproduce it. koma-letter back-ends explicitly allows latex export snippets, e.g., #+title: @@latex:\something@@ produces the expected \something. Ummm, I thought I was going crazy as, for once, I had tested using

Re: [O] ECM for: issues with publishing to LaTeX using #INCLUDE

2015-06-18 Thread Nicolas Goaziou
Hello, Robert Klein rokl...@roklein.de writes: On Thu, 18 Jun 2015 09:15:50 +0200 Robert Klein rokl...@roklein.de wrote: The file exported first exports Ok, the others don't. Sorry, the file _published_ first exports Ok, the others not. For the ECM I export w/ org-publish-project.

Re: [O] [feature request] org-capture-window-setup to stop capture window taking up whole frame

2015-06-18 Thread Eric S Fraga
On Wednesday, 17 Jun 2015 at 16:41, Subhan Michael Tindall wrote: Quickie patch, maybe I'll work it up as per comments later submit but this will fix things for you (no guarantees, not widely tested) Thanks for this. Works okay if there is more than one window which is a step in the right

Re: [O] ox-koma-letter: how to use @@LaTeX:@@ specific commands in #+ directives

2015-06-18 Thread Eric S Fraga
On Thursday, 18 Jun 2015 at 10:47, Rasmus wrote: [...] Right. #+author is not parsed. In the patch I enable parsing on this and others. Nicolas: are there any of the keywords in the patch that shouldn't be parsed? Also, I left out FROM_ADDRESS as I remember it interprets newlines and I

Re: [O] org-babel-lob-ingest and debug-init

2015-06-18 Thread Andreas Leha
Hi, Nicolas Goaziou m...@nicolasgoaziou.fr writes: Hello, Andreas Leha andreas.l...@med.uni-goettingen.de writes: Andreas Leha andreas.l...@med.uni-goettingen.de writes: Hi all, I have two lines like this in my .emacs: (org-babel-lob-ingest ~/path/to/library-of-babel.org)

Re: [O] ox-koma-letter: how to use @@LaTeX:@@ specific commands in #+ directives

2015-06-18 Thread Rasmus
Eric S Fraga e.fr...@ucl.ac.uk writes: On Thursday, 18 Jun 2015 at 00:03, Nicolas Goaziou wrote: [...] I cannot reproduce it. koma-letter back-ends explicitly allows latex export snippets, e.g., #+title: @@latex:\something@@ produces the expected \something. Ummm, I thought I was