Ben Ward <benjamin.w...@bathspa.org> writes: > #+begin_src R :exports both > full <- read.csv(file="~/Documents/BSc Biology/Third Year/BY6001-40 - > Dissertation/Data and Analysis/Evolution Results.csv", head=T) > library("lattice") > ecoli = subset(full, Bacterium=="E.coli") > edett = subset(ecoli, Cleaner=="Dettol") > egarl = subset(ecoli, Cleaner=="Garlic") > MIC.mod = lm(MIC. ~ 1+Challenge*Cleaner*Replicate, data=ecoli) > #+end_src
Hi Ben, Use the :width and :height header args to alter the dimensions of the graphics. The arguments go straight through to the R device, so if you are plotting to pdf they will be interpreted as inches (whereas they will be pixels for png, jpeg etc). With current Org, you will also need :results graphics in order to tell R to send graphics to the designated file. In addition, with lattice graphics, unless you are using :session, I believe you will need :results output (so :results output graphics). Do get back to us with any problems. There are several people who routinely use R to include graphics in Org documents. Dan p.s. Request to everyone: can we try as much as possible to use reproducible examples on-list? I.e. toy examples that anyone can execute, instead of real examples that rely on datasets that not everyone has access to. > #+begin_src R :file fig1.pdf > xyplot( MIC.+fitted(MIC.mod) ~ Challenge, data=ecoli, > xlab="Challenge", ylab="MIC %", auto.key=TRUE) > #+end_src > > #+attr_latex: width=0.6\textwidth wrap placement={h}{0.4\textwidth} > #+label: fig:one > #+caption: Linar Plot of real data and fitted model values > #+results: fig1 > [[file:fig1.pdf]] > > In the case of this code, actually altering size works, but it keeps > putting the image at the end of my document. Then other images, placed > with pretty much the same code, give or take for filenames and such, > won't increace in size, but will alter their movement. > I'm wondering if using pure latex for my images would be an easier solution. > > Cheers, > Ben. > > > On 07/01/2011 18:30, Thomas S. Dye wrote: >> Aloha Ben, >> >> Can you share an example that doesn't work for you? >> >> All the best, >> Tom >> >> On Jan 7, 2011, at 7:23 AM, Ben Ward wrote: >> >>> Hi All, >>> >>> I've been doing some work with babel and R to generate graphs that >>> I've then been including useing attr latex. >>> >>> But when I include images the always appear very very small, even >>> when I mess about with the width settings of the attr latex line and >>> remove the options for wrap and such. >>> >>> Does anybody else use R with images and org, and could tell me how >>> they handle including R graphics in their documents? >>> >>> Thanks, >>> Ben. W >>> >>> _______________________________________________ >>> Emacs-orgmode mailing list >>> Please use `Reply All' to send replies to the list. >>> Emacs-orgmode@gnu.org >>> http://lists.gnu.org/mailman/listinfo/emacs-orgmode >> >> >> > > > _______________________________________________ > Emacs-orgmode mailing list > Please use `Reply All' to send replies to the list. > Emacs-orgmode@gnu.org > http://lists.gnu.org/mailman/listinfo/emacs-orgmode _______________________________________________ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode