Re: [Fink-beginners] "configure: error: C++ compiler cannot create executables"

2013-08-22 Thread Sarah Gilman
Thanks! That fixed it! - Sarah On Aug 22, 2013, at 11:58 AM, Alexander Hansen wrote: > On 8/22/13 11:15 AM, Sarah Gilman wrote: >> Thanks, >> >> here's the contents of config.log: >> > > >> ./configure: line 3013: flag-sort: command not found > > Woops. xtide should have had that in its b

Re: [Fink-beginners] "configure: error: C++ compiler cannot create executables"

2013-08-22 Thread Alexander Hansen
On 8/22/13 11:15 AM, Sarah Gilman wrote: > Thanks, > > here's the contents of config.log: > > ./configure: line 3013: flag-sort: command not found Woops. xtide should have had that in its build dependencies. You can work around the issue by installing the flag-sort package before trying to i

Re: [Fink-beginners] "configure: error: C++ compiler cannot create executables"

2013-08-22 Thread Sarah Gilman
Thanks, here's the contents of config.log: This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by XTide configure 2.13.2, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configu

Re: [Fink-beginners] BioPerl error

2013-08-22 Thread Alexander Hansen
I'm glad it worked. I forgot to suggest another option which was a little less lethal than a removal, which is to rename temporarily the directory where it resides, e.g. "sudo mv /opt/local /opt/local.bak"; and similarly if you need Fink out of the way use "sudo mv /sw /sw.bak". That has essen

Re: [Fink-beginners] BioPerl error

2013-08-22 Thread prhardoim
Dear Alexander Hansen, Thank you so much for the prompt reply. Also thank you so much for your valuable tip. I have been struggling with this challenge since the previous wekend. Only after wipe out Macports I managed to install BioPerl. The commenting out strategy (#) by modifying the .profil

Re: [Fink-beginners] "configure: error: C++ compiler cannot create executables"

2013-08-22 Thread Alexander Hansen
On 8/22/13 11:03 AM, Hanspeter Niederstrasser wrote: > On 8/22/2013 1:22 PM, Sarah Gilman wrote: >> I'm running OS 10.6.8 and Xcode Version 3.2.2 (1650) >> >> I think have successfully installed fink 0.35.1 >> >> I ran the command "fink selfupdate-rsync" without any problems >> >> But when I try "

Re: [Fink-beginners] "configure: error: C++ compiler cannot create executables"

2013-08-22 Thread Hanspeter Niederstrasser
On 8/22/2013 1:22 PM, Sarah Gilman wrote: > I'm running OS 10.6.8 and Xcode Version 3.2.2 (1650) > > I think have successfully installed fink 0.35.1 > > I ran the command "fink selfupdate-rsync" without any problems > > But when I try "fink install xtide", I get the following error message > > che

[Fink-beginners] "configure: error: C++ compiler cannot create executables"

2013-08-22 Thread Sarah Gilman
I'm running OS 10.6.8 and Xcode Version 3.2.2 (1650) I think have successfully installed fink 0.35.1 I ran the command "fink selfupdate-rsync" without any problems But when I try "fink install xtide", I get the following error message checking whether make sets $(MAKE)... yes checking whether

Re: [Fink-beginners] BioPerl error

2013-08-22 Thread Alexander Hansen
On 8/22/13 3:22 AM, prhard...@ualg.pt wrote: > Hi there, > > I need your assistance. I'm trying to install BioPerl with Fink, but > got a warning follow the the error message with tk-pm5124-804.031-2 > during the procedure. I could not find a reasanable answer on FAQ > forum or even google. Could y

[Fink-beginners] BioPerl error

2013-08-22 Thread prhardoim
Hi there, I need your assistance. I'm trying to install BioPerl with Fink, but got a warning follow the the error message with tk-pm5124-804.031-2 during the procedure. I could not find a reasanable answer on FAQ forum or even google. Could you give me a tip? The error message: 1 warning g