Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-09 Thread Martin Costabel
Daniel Johnson wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On Mar 6, 2007, at 4:04 PM, aaron bryden wrote: Okay, yes, i am seeing that even though locate didn't find the one in /usr/local it must be affecting the build. It still seems strange to me that the error can say it is

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-09 Thread aaron bryden
Yes, I looked at this again and yes DYLD_LIBRARY_PATH is getting set to include /usr/local even though I don't know where or what would have set it. I removed the other libpng and pymol now works. Thank you very much, I was about to reinstall OS X as a whole and try again. Where other than the

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-09 Thread Martin Costabel
aaron bryden wrote: Yes, I looked at this again and yes DYLD_LIBRARY_PATH is getting set to include /usr/local even though I don't know where or what would have set it. I removed the other libpng and pymol now works. Thank you very much, I was about to reinstall OS X as a whole and try

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-08 Thread Daniel E. Macks
The cmd.so in pymol appears to be built with flat namespace. That means (I think) that even though cmd.so explicitly says to use the libjpeg.3.dylib in /sw/lib (as per 'otool -L' output, i.e., the one that was used when compiling cmd.so), the /usr/local/lib one that was already loaded is used

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-07 Thread Daniel Johnson
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On Mar 6, 2007, at 4:04 PM, aaron bryden wrote: Okay, yes, i am seeing that even though locate didn't find the one in /usr/local it must be affecting the build. It still seems strange to me that the error can say it is loading the one in /sw/lib

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-06 Thread aaron bryden
Sorry for the late response. I got away from this side of what i do over the weekend and yesterday. dyld: loaded: /bin/sh dyld: loaded: /usr/lib/libncurses.5.4.dylib, cpu-sub-type: 3 dyld: loaded: /usr/lib/libSystem.B.dylib, cpu-sub-type: 3 dyld: loaded: /usr/lib/libgcc_s.1.dylib, cpu-sub-type: 3

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-06 Thread aaron bryden
I also tried rebuilding both pymol and libpng3 after deleting frozen bubble and the old libpng3 and I still get the same error. Is something being cached in a way that I don't understand or something, or am i pretty much at the point where a fresh install of OS X is my only option? I am not that

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-06 Thread Alexander K. Hansen
aaron bryden wrote: Sorry for the late response. I got away from this side of what i do over the weekend and yesterday. dyld: loaded: /bin/sh dyld: loaded: /usr/lib/libncurses.5.4.dylib, cpu-sub-type: 3 dyld: loaded: /usr/lib/libSystem.B.dylib, cpu-sub-type: 3 dyld: loaded:

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-06 Thread Benjamin Reed
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 aaron bryden wrote: dyld: loaded: /usr/X11R6/lib/libGL.1.dylib, cpu-sub-type: 3 dyld: loaded: /usr/X11R6/lib/libGLU.1.dylib, cpu-sub-type: 3 dyld: loaded: /usr/local/lib/libpng.3.dylib, cpu-sub-type: 3 ^

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-06 Thread aaron bryden
Okay, yes, i am seeing that even though locate didn't find the one in /usr/local it must be affecting the build. It still seems strange to me that the error can say it is loading the one in /sw/lib but that the version is wrong even though the version is correct. aaron On 3/6/07, Alexander K.

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-01 Thread aaron bryden
That's what i'm not understanding is why the error listed by pymol is referring to the one in /sw/lib/libpng.3.dylib which otool says is version 16. I also tried deleting frozen bubble and still had the problems. Do i need to completely wipe fink again and reinstall, or is their some other

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-01 Thread Alexander Hansen
On 3/1/07, aaron bryden [EMAIL PROTECTED] wrote: That's what i'm not understanding is why the error listed by pymol is referring to the one in /sw/lib/libpng.3.dylib which otool says is version 16. I also tried deleting frozen bubble and still had the problems. Do i need to completely wipe

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-01 Thread Alexander Hansen
On 3/1/07, Alexander Hansen [EMAIL PROTECTED] wrote: On 3/1/07, aaron bryden [EMAIL PROTECTED] wrote: That's what i'm not understanding is why the error listed by pymol is referring to the one in /sw/lib/libpng.3.dylib which otool says is version 16. I also tried deleting frozen bubble and

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-03-01 Thread David R. Morrison
Aaron, Can you please try the following command and tell us the result? env DYLD_PRINT_LIBRARIES=1 pymol Thanks, Dave On Mar 1, 2007, at 4:25 AM, Alexander Hansen wrote: On 3/1/07, aaron bryden [EMAIL PROTECTED] wrote: That's what i'm not understanding is why the error listed by pymol

[Fink-beginners] Fwd: pymol, libpng problems

2007-02-28 Thread aaron bryden
oops meant to send this to fink-beginners also -- Forwarded message -- From: aaron bryden [EMAIL PROTECTED] Date: Feb 27, 2007 2:59 PM Subject: Re: [Fink-beginners] pymol, libpng problems To: Daniel E. Macks [EMAIL PROTECTED] Thanks for your help. I just compiled

Re: [Fink-beginners] Fwd: pymol, libpng problems

2007-02-28 Thread David R. Morrison
On Feb 28, 2007, at 10:23 AM, aaron bryden wrote: oops meant to send this to fink-beginners also -- Forwarded message -- From: aaron bryden [EMAIL PROTECTED] Date: Feb 27, 2007 2:59 PM Subject: Re: [Fink-beginners] pymol, libpng problems To: Daniel E. Macks [EMAIL