Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv11032
Modified Files: pymol-py.info Log Message: update pymol-py from unstable Index: pymol-py.info =================================================================== RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/pymol-py.info,v retrieving revision 1.5 retrieving revision 1.6 diff -u -d -r1.5 -r1.6 --- pymol-py.info 26 Aug 2009 07:14:22 -0000 1.5 +++ pymol-py.info 5 Sep 2009 05:31:46 -0000 1.6 @@ -1,43 +1,60 @@ Info2: << Package: pymol-py%type_pkg[python] -Version: 1.1r1 -Revision: 1000 -Distribution: (%type_pkg[python] = 23) 10.4, (%type_pkg[python] = 24) 10.4, (%type_pkg[python] = 24) 10.5, (%type_pkg[python] = 25) 10.4, (%type_pkg[python] = 25) 10.5 +Version: 1.2r0 +Revision: 1002 Maintainer: Jack Howarth <howa...@nitro.med.uc.edu> -Type: python (2.3 2.4 2.5) -#Source: mirror:sourceforge:fink/pymol-%v-src.tgz -Source: http://diablo.ucsc.edu/~wgscott/pymol/pymol-%v-src.tgz -Source-MD5: a67e7b7d9481060b12d1f017b88f73c0 +Type: python (2.5 2.6) +#Source: mirror:sourceforge:fink/pymol-%v-src.tar.bz2 +Source: http://diablo.ucsc.edu/~wgscott/pymol/pymol-%v-src.tar.bz2 +Source-MD5: 4bd134a748e122268c8531d297d479ff +Source2: http://www.weizmann.ac.il/ISPC/eMovie.py +Source2-MD5: 832252d4cee1ba88d50a35681b5ecd4b +Source3: http://www.weizmann.ac.il/ISPC/eMovie_rigimol.inp +Source3-MD5: 7f61fc224103aa24a92f1a03f985ce49 +Source4: http://diablo.ucsc.edu/~wgscott/pymol/pynmr_0.37f_src.tar.bz2 +Source4-MD5: cb4a3906766681ce9230ef5515e1aa1c PatchFile: pymol-py.patch -PatchFile-MD5: d4971eade6c1155dee508139a4e33692 +PatchFile-MD5: 292ca189abe92c4d5bc2bac819aeb14e SourceDirectory: pymol-%v -# Source2: http://www.weizmann.ac.il/ISPC/eMovie.py -# Source2-MD5: 0d2236e26f00d944223f6c17049c2b97 -Depends: python%type_pkg[python], libpng3-shlibs, numeric-py%type_pkg[python], tcltk, pmw-py%type_pkg[python] (>= 1.2-1), freeglut-shlibs, blt-shlibs -BuildDepends: libpng3, freeglut, db43-ssl (>= 4.3.29-1001)|db43 (>= 4.3.29-1001), readline (>= 4.3-1028), gdbm3, expat, tcltk-dev, blt, x11-dev, fink (>= 0.24.12) -Conflicts: pymol, pymol-py22, pymol-py23, pymol-py24, pymol-py25 -Replaces: pymol, pymol-py22, pymol-py23, pymol-py24, pymol-py25 +Depends: python%type_pkg[python], libpng3-shlibs, numeric-py%type_pkg[python], tcltk, pmw-py%type_pkg[python] (>= 1.3.2-1000), freeglut-shlibs, blt-shlibs, meschach-shlibs +BuildDepends: libpng3, freeglut, db43-ssl (>= 4.3.29-1001)|db43 (>= 4.3.29-1001), readline (>= 4.3-1028), gdbm3, expat, tcltk-dev, blt, x11-dev, swig, meschach, fink (>= 0.24.12) +Conflicts: pymol, pymol-py22, pymol-py23, pymol-py24, pymol-py25, pymol-py26 +Replaces: pymol, pymol-py22, pymol-py23, pymol-py24, pymol-py25, pymol-py26 PatchScript: sed 's|@FINKPREFIX@|%p|g' < %{PatchFile} | sed 's|python2.X|python%type_raw[python]|g' | sed 's|pymol-py2X|pymol-py%type_pkg[python]|g' | patch -p1 CompileScript: << -(cd setup; cp Rules.osx-fink %b/Rules.delsci) +#! /bin/sh -ex +(cd setup; cp Rules.osx-fink %b/Rules.delsci) || exit 1 +case `uname -r` in +10.*) perl -pi -e "s,-Wno-long-double,," ./Rules.delsci ;; +esac make -f Makefile.delsci +cd %b/../pynmr_0.37f_src/pmg_tk/startup/pynmr +./run.macos << InstallScript: << +#! /bin/sh -ex mkdir -p %i/lib/%n/bin -(cd setup; cp pymol.com.osx-fink %i/lib/%n/bin/pymol) +(cd setup; cp pymol.com.osx-fink %i/lib/%n/bin/pymol) || exit 1 cp -r data modules examples test scripts %i/lib/%n ln -s %p/share/doc/%n/LICENSE %i/lib/%n/LICENSE.txt -mkdir -p %i/etc/profile.d -echo "append_path PATH %p/lib/%n/bin" > %i/etc/profile.d/%n.csh -echo "append_path PATH %p/lib/%n/bin" > %i/etc/profile.d/%n.sh -chmod 755 %i/etc/profile.d/%n.* -# cp ../eMovie.py %p/lib/python%type_raw[python]/modules/pmg_tk/startup/. +cp ../eMovie.py %i/lib/pymol-py%type_pkg[python]/modules/pmg_tk/startup/eMovie.py +cp ../eMovie_rigimol.inp %i/lib/pymol-py%type_pkg[python]/eMovie_rigimol.inp +mkdir %i/lib/pymol-py%type_pkg[python]/modules/pmg_tk/startup/pynmr +cd ../pynmr_0.37f_src/pmg_tk/startup +cp plug_nmr.py %i/lib/pymol-py%type_pkg[python]/modules/pmg_tk/startup +cd pynmr +cp -r Crmsd.so *.py BIOPYTHON_LICENSE LICENSE README help images test_data %i/lib/pymol-py%type_pkg[python]/modules/pmg_tk/startup/pynmr +rm %i/lib/pymol-py%type_pkg[python]/modules/pmg_tk/startup/pynmr/test_data/.noe.tbl.swp << DocFiles: DEVELOPERS LICENSE README PostInstScript: << +update-alternatives --install %p/bin/pymol pymol %p/lib/pymol-py%type_pkg[python]/bin/pymol %type_pkg[python] %p/bin/python%type_raw[python] -O %p/lib/python%type_raw[python]/compileall.py -q %p/lib/%n/modules << PreRmScript: << +if [ $1 != "upgrade" ]; then + update-alternatives --remove pymol %p/lib/pymol-py%type_pkg[python]/bin/pymol +fi PACKAGE=%N dpkg --listfiles $PACKAGE | /usr/bin/awk '$0~/\.py$/ {print $0"c\n" $0"o"}' | @@ -56,11 +73,15 @@ DescPackaging: << The tarball used for this version was created in accordance to the BSD license of pymol using the following instructions... - svn export -r 3395 https://pymol.svn.sourceforge.net/svnroot/pymol/trunk/pymol pymol-1.1r1 - tar --exclude=.svn -zcvf pymol-1.1r1-src.tgz pymol-1.1r1 + svn -r3820 co https://pymol.svn.sourceforge.net/svnroot/pymol/trunk/pymol pymol-1.2r0 + tar --exclude=.svn -jcvf pymol-1.2r0-src.tar.bz2 pymol-1.2r0 Added eMovie.py plug-in manually. Commented out line that opens the window for eMovie by default every time pymol is started as this is annoying behavior. eMovie is activated via the plugin menu. +Added -d "_ set stereo_double_pump_mono,quiet=1" to exec on pymol to limit video +artifacts on drivers that do not properly support hardware stereo yet such as those for the +HD 2600 XT. +Added pynmr plugin. << DescUsage: Just type 'pymol' at the command prompt inside an X environment. License: OSI-Approved ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs