Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs17.sourceforge.net:/tmp/cvs-serv29192
Modified Files:
cctbx.info
Log Message:
cctbx version-independent placeholder for compatibility
Index: cctbx.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/cctbx.info,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -d -r1.11 -r1.12
--- cctbx.info 12 Dec 2007 00:15:42 -0000 1.11
+++ cctbx.info 13 Dec 2007 05:47:34 -0000 1.12
@@ -1,106 +1,21 @@
Package:cctbx
Version: 71118
# 2007_11_18_2203
-Revision: 1
+Revision: 2
+Depends: cctbx-10.5 | cctbx-10.4
GCC: 4.0
BuildDependsOnly: false
NoSourceDirectory: true
+Type: NoSource
NoSetLDFLAGS: true
NoSetCPPFLAGS: true
-Source:
http://cci.lbl.gov/cctbx_build/results/2007_11_18_2203/cctbx_bundle.tar.gz
-Source-MD5: d6d4ce016a438c502436e8b8699fc163
-SourceRename: %n-%v.tar.gz
-Description: Computational Crystallography Toolbox
+Description: Computational Crystallography Toolbox
DescDetail: <<
-The Computational Crystallography Toolbox (cctbx) is being developed as the
-open source component of the PHENIX system. The goal of the PHENIX project is
-to advance automation of macromolecular structure determination. PHENIX
-depends on the cctbx, but not vice versa. This hierarchical approach enforces
-a clean design as a reusable library. The cctbx is therefore also useful for
-small-molecule crystallography and even general scientific applications.
-
-The cctbx code base is available without restrictions and free of charge to
-all interested developers, both academic and commercial. The entire community
-is invited to actively participate in the development of the code base. A
-sophisticated technical infrastructure that enables community based software
-development is provided by SourceForge. This service is also free of charge
-and open to the entire world.
-
-The cctbx is designed with an open and flexible architecture to promote
-extendability and easy incorporation into other software environments. The
-package is organized as a set of ISO C++ classes with Python bindings. This
-organization combines the computational efficiency of a strongly typed
-compiled language with the convenience and flexibility of a dynamically typed
-scripting language in a strikingly uniform and very maintainable way.
-
-Use of the Python interfaces is highly recommended, but optional. The cctbx
-can also be used purely as a C++ class library. The SourceForge cctbx project
-currently contains these modules:
-
-libtbx: The build system common to all other modules. This is a very thin
-wrapper around the SCons software construction tool.
-
-boost_adaptbx: A very small adaptor toolbox with platform-independent
-instructions for building the Boost.Python library.
-
-scitbx: Libraries for general scientific computing (i.e. libraries that are
-not specific to crystallographic applications): a family of high-level C++
-array types, a fast Fourier transform library, and a C++ port of the popular
-LBFGS conjugate gradient minimizer, all including Python bindings. These
-libraries are separated from the crystallographic code base to make them
-easily accessible for non-crystallographic application developers.
-
-cctbx: Libraries for general crystallographic applications, useful for both
-small-molecule and macro-molecular crystallography. The libraries in the cctbx
-module cover everything from algorithms for the handling of unit cells to
-high-level building blocks for refinement algorithms. Note the distinction
-between the cctbx project and the cctbx module. In retrospect we should have
-chosen a different name for the project, but the current naming reflects how
-the modules have evolved and it would be too disruptive to start a grand
-renaming.
-
-iotbx: The youngest member in the family: evolving libraries for reading and
-writing established file formats.
-<<
-CompileScript: <<
-#!/bin/sh -efv
-mkdir cctbx_build
-cd cctbx_build
-# requires a Framwork python build
-/System/Library/Frameworks/Python.framework/Versions/Current/bin/python \
- ../cctbx_sources/libtbx/configure.py mmtbx
-# The last command initializes the cctbx_build directory and creates
-# a file setpaths.csh (among others). This file must be used to initialize
-# a new shell or process with the cctbx settings:
-
-source setpaths.sh
-
-# Find the number of cpus:
-num_cpu=$( sysctl hw.logicalcpu | awk '{print $NF}' )
-# On a machine with multiple CPUs enter:
-
-libtbx.scons -j $num_cpu .
-<<
-InstallScript: <<
-perl -pi -e 's|prepend|append|g' %n_build/setpaths.csh
-perl -pi -e 's|prepend|append|g' %n_build/setpaths.sh
-mkdir -p %i/share/xtal/%n
-cp -R * %i/share/xtal/%n/.
-#
-# Set up startup scripts
-mkdir -p %i/etc/profile.d
-echo "source %p/share/xtal/%n/%n_build/setpaths.sh" > %i/etc/profile.d/%n.sh
-echo "source %p/share/xtal/%n/%n_build/setpaths.csh" > %i/etc/profile.d/%n.csh
-chmod a+x %i/etc/profile.d/%n.*
-<<
-PostInstScript: <<
-# This changes the paths for the shell and python scripts to those of the
-# final install point rather than the build or debian root directory.
-cd %p/share/xtal/%n/cctbx_build
-/System/Library/Frameworks/Python.framework/Versions/Current/bin/python \
- ../cctbx_sources/libtbx/configure.py mmtbx
-#
+cctbx compiled on 10.4 is incompatable with 10.5 and vice-versa.
+This attempts to solve the compatibility problem seamlessly.
<<
+CompileScript: /usr/bin/true
+InstallScript: /usr/bin/true
License: OSI-Approved
Maintainer: W. G. Scott <[EMAIL PROTECTED]>
Homepage: http://cctbx.sourceforge.net/
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