Re: [Fink-devel] non-fatal error in fink git sandbox-build branch

2016-11-21 Thread Jack Howarth
quot;$Fink::Config::basepath/bin/apt-get 1>/dev/null 2>/dev/null", don't. Jack On Mon, Nov 21, 2016 at 7:15 AM, Jack Howarth wrote: > Daniel and Alexander, >After injecting the updated sandbox-build fink git branch on my > machine, I noticed a non-fatal wa

[Fink-devel] non-fatal error in fink git sandbox-build branch

2016-11-21 Thread Jack Howarth
Daniel and Alexander, After injecting the updated sandbox-build fink git branch on my machine, I noticed a non-fatal warning of... ./Services/execute_nonroot_okay.t 1/12 Use of uninitialized value $Fink::Config::basepath in concatenation (.) or string at /sw/src/fink.build/fink-0.4

[Fink-devel] llvm-clang needed for gromacs-2016-1

2016-11-13 Thread Jack Howarth
Hanspeter, It has been a couple of weeks now since I emailed David Fang about the update to the llvm39 package to add the proposed llvm-clang, libomp-dev and libomp-shlibs split-offs required to cleanly support packages like the gromacs/gromacs-mpi-2016-1 updates which require a clang that su

Re: [Fink-devel] llvm-clang needed for gromacs-2016-1

2016-11-13 Thread Jack Howarth
13, 2016 at 1:42 PM, Jack Howarth wrote: > Hanspeter, > It has been a couple of weeks now since I emailed David Fang > about the update to the llvm39 package to add the proposed llvm-clang, > libomp-dev and libomp-shlibs split-offs required to cleanly support > packages l

Re: [Fink-devel] reworked sandboxing support

2016-11-08 Thread Jack Howarth
urceforge.net/p/fink/package-submissions/4834/ On Sun, Nov 6, 2016 at 10:34 PM, Jack Howarth wrote: > Daniel and Alexander, > The attached patch reworks the previously proposed sandboxing > support by... > > 1) Enabling the sandbox usage by default (except during

[Fink-devel] reworked sandboxing support

2016-11-06 Thread Jack Howarth
Daniel and Alexander, The attached patch reworks the previously proposed sandboxing support by... 1) Enabling the sandbox usage by default (except during fink bootstraps) 2) Adding a 'NoSandbox' field for the Info files which can be used to disable the sandbox on a per package basis. 3) Re

Re: [Fink-devel] completed sandboxing support for fink

2016-11-06 Thread Jack Howarth
am still exploring (but isn't really a blocker) is adding support for a BuildSandbox field to the fink Info file syntax so the we can disable sandboxing at the info file level rather than just with UseSandbox in %p/etc/fink.conf and --build-in-sandbox/--no-build-in-sandbox. Jack

Re: [Fink-devel] completed sandboxing support for fink

2016-11-05 Thread Jack Howarth
Daniel and Alexander, An enhanced version of the previous patch which adds the installation of a fink.sb.5 man page. Jack On Sat, Nov 5, 2016 at 8:34 AM, Jack Howarth wrote: > Daniel and Alexander, >The pull request to add sandboxing support is now comple

[Fink-devel] completed sandboxing support for fink

2016-11-05 Thread Jack Howarth
Daniel and Alexander, The pull request to add sandboxing support is now completed on fink git against master at https://github.com/fink/fink/pull/135/files, but upstream master seem to have unrelated bootstrap issues. However, the attached fink_sandboxing.diff applies these same changes onto

[Fink-devel] patches to add sandboxing to fink

2016-11-03 Thread Jack Howarth
I have posted a pull request at https://github.com/fink/fink/pull/135 to add automatic sandboxing of fink builds. The patches emulate the MacPorts approach of creating a sandboxing profile string and passing it to 'sandbox-exec -p'. The blacklisted directories are set from the list of directori

Re: [Fink-devel] Apparently libXt isn't actually a leaf on the X11 library tree after all

2016-11-03 Thread Jack Howarth
On Thu, Nov 3, 2016 at 7:56 PM, Hanspeter Niederstrasser wrote: > > On 11/2/16 6:48 PM, Alexander Hansen wrote: > > We had thought that libXt wasn’t actually linked in the X11 tree, but this > > appears not to be so. > > > > It’s linked by: > > /opt/X11/lib/libXaw6.6.dylib > > /opt/X11/lib/libXaw

Re: [Fink-devel] Apparently libXt isn't actually a leaf on the X11 library tree after all

2016-11-03 Thread Jack Howarth
Daniel, I am seeing... $ xemacs Error: Couldn't find per display information for ii xemacs 21.4.22-8 Highly customizable text editor ii libxaw3dxft1.6.2-6Athena widget set with 3D look ii libxaw3dxft-sh 1.6.2-6Athena widget set with 3D look ii libxt

Re: [Fink-devel] llvm39-3.9.0-2 to add common llvm-clang, libomp-dev and libomp-shlibs split-offs

2016-11-01 Thread Jack Howarth
_back("-fopenmp"); // If no option regarding the use of TLS in OpenMP codegeneration is The packaging is now complete. Jack On Tue, Nov 1, 2016 at 2:48 PM, Jack Howarth wrote: > David and Hanspeter, >The deprecation of Boost support, in favor of OpenMP

[Fink-devel] llvm39-3.9.0-2 to add common llvm-clang, libomp-dev and libomp-shlibs split-offs

2016-11-01 Thread Jack Howarth
David and Hanspeter, The deprecation of Boost support, in favor of OpenMP, in the gromacs 2016 release motivated me to enhance the llvm39 and future llvmXY packaging so that fink package maintainers can use the LLVM.org clang compilers for OpenMP support in a more transparent manner. The pro

Re: [Fink-devel] fink packages dependent on motif officially broken

2016-10-24 Thread Jack Howarth
On Mon, Oct 24, 2016 at 11:06 AM, Alexander Hansen < alexanderk.han...@gmail.com> wrote: > > On Oct 24, 2016, at 05:59, Jack Howarth wrote: > > > > On Sun, Oct 23, 2016 at 8:38 PM, Kevin Horton > wrote: > >> Jack, >> >> Thanks for all your work

Re: [Fink-devel] fink packages dependent on motif officially broken

2016-10-24 Thread Jack Howarth
the developers to find the libXt linkages in binaries on their on, without a reminder from 'fink validate', seems like a heavy lift. > > https://sourceforge.net/p/fink/package-submissions/4779/ > > Thanks. > > Kevin Horton - xephem package maintainer > > > On

Re: [Fink-devel] proposed libxt and libxt-flat issues

2016-10-23 Thread Jack Howarth
On Sun, Oct 23, 2016 at 2:20 PM, Jack Howarth wrote: > Daniel, > The proposed libxt/libxt-flat packaging in your experimental, which > places both in %p rather than buried subdirectories, would seem to require > either... > > every single package building against Xqua

[Fink-devel] proposed libxt and libxt-flat issues

2016-10-23 Thread Jack Howarth
Daniel, The proposed libxt/libxt-flat packaging in your experimental, which places both in %p rather than buried subdirectories, would seem to require either... every single package building against Xquartz in fink have a BuildDepends on libxt and a Depends on libxt-shlibs added (which is a r

[Fink-devel] fink packages dependent on motif officially broken

2016-10-22 Thread Jack Howarth
FYI, the Xquartz 2.7.10 release is now out so all of the fink packages that are dependent on motif are now broken so it is time to start pushing the fixes on tracker. https://sourceforge.net/p/fink/package-submissions/4771/ https://sourceforge.net/p/fink/package-submissions/4772/ https://sourcefor

[Fink-devel] Use of uninitialized value $abs in string

2016-10-07 Thread Jack Howarth
Daniel, I am seeing a build failure for libnetsnmp30-shlibs-5.7.2-3 of ./snmplib/transports/.libs/snmpUnixDomain.d Use of uninitialized value $abs in string ne at /sw/bin/fink-package-precedence line 164. Use of uninitialized value $abs in exists at /sw/bin/fink-package-precedence line 16

Re: [Fink-devel] ncurses 6.0 packages for fink base

2016-10-07 Thread Jack Howarth
On Fri, Oct 7, 2016 at 8:06 AM, Daniel Johnson wrote: > > > On Oct 7, 2016, at 6:55 AM, Jack Howarth > wrote: > > > > > > > > On Thu, Oct 6, 2016 at 5:40 PM, Daniel Johnson < > daniel.johnso...@gmail.com> wrote: > > > > > On Oct 6, 20

Re: [Fink-devel] ncurses 6.0 packages for fink base

2016-10-07 Thread Jack Howarth
On Thu, Oct 6, 2016 at 5:40 PM, Daniel Johnson wrote: > > > On Oct 6, 2016, at 1:32 PM, Jack Howarth > wrote: > > > > I noticed that Fedora is building both --with-abi-version=5 and > --with-abi-version=6 in their ncurses 6.0 package... > > > >

Re: [Fink-devel] ncurses 6.0 packages for fink base

2016-10-06 Thread Jack Howarth
-version=5 shlibs are only there for back-ward compatibility and not new builds. On Thu, Oct 6, 2016 at 1:21 PM, Jack Howarth wrote: > > > On Thu, Oct 6, 2016 at 11:41 AM, Daniel Johnson < > daniel.johnso...@gmail.com> wrote: > >> >> > On Oct 6, 2016,

Re: [Fink-devel] ncurses 6.0 packages for fink base

2016-10-06 Thread Jack Howarth
On Thu, Oct 6, 2016 at 11:41 AM, Daniel Johnson wrote: > > > On Oct 6, 2016, at 10:19 AM, Jack Howarth > wrote: > > > > Chris, > > I've posted packaging for libncursesw6-6.0-1 and ncurses6-6.0-1 to > fink tracking... > > > > https

[Fink-devel] ncurses 6.0 packages for fink base

2016-10-06 Thread Jack Howarth
Chris, I've posted packaging for libncursesw6-6.0-1 and ncurses6-6.0-1 to fink tracking... https://sourceforge.net/p/fink/package-submissions/4803/ as well as an update to libncursesw5-5.9-20110507-2 to make it aware of libncursesw6. https://sourceforge.net/p/fink/package-submissions/4804/

[Fink-devel] apple-gdb and gdb vs 10.12"

2016-10-04 Thread Jack Howarth
We should add an additional comment to the existing code-signing instructions of the DescUsage section in the apple-gdb and gdb packages... Apple has increased the security on Sierra so that the additional set of executing... $ csrutil enable --without debug while rebooted under the Recovery P

[Fink-devel] pil-systempython27-1.1.7-7 build failure

2016-10-04 Thread Jack Howarth
Daniel, I am seeing the following build failure in pil-systempython27-1.1.7-7 on darwin15 cc -fno-strict-aliasing -fno-common -dynamic -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -

[Fink-devel] error: /Library/Developer/CommandLineTools/usr/bin/otool-classic: unknown char `-'

2016-10-02 Thread Jack Howarth
Daniel, The texinfo-6.3-103 packaging needs a versioned BuildDepends on fink-package-precedence_0.30-1 to avoid the build failure... Found use of headers from 3 fink packages: libgettext8-dev libiconv-dev libncurses5 Scanning binaries for incorrect dyld linking... error: /Library/Developer/C

[Fink-devel] Xquartz 2.7.10-rc2 breakage

2016-09-25 Thread Jack Howarth
Xquartz is currently testing the upcoming 2.7.10 release which has the following significant change libXt Both libXt.6.dylib and libXt.7.dylib are two-level-namespaced now A flat_namespace version of libXt is available in /opt/X11/lib/flat_namespace to help ease the transition (#96292) S

[Fink-devel] no Xcode 8 CLI for 10.11

2016-09-14 Thread Jack Howarth
We should discourage fink users from installing Xcode 8 on 10.11. Apple pulled the 10.11 Command Line Tools package at the last moment because they accidentally were distributing the 10.11 SDK installed in / rather than the 10.12 SDK which is required by the Swift 3 compiler. It doesn't appear that

Re: [Fink-devel] xcode 8 fix for fink-buildenv-modules

2016-09-11 Thread Jack Howarth
On Sun, Sep 11, 2016 at 8:21 AM, Alexander Hansen < alexanderk.han...@gmail.com> wrote: > > On Sep 11, 2016, at 03:13, Hanspeter Niederstrasser < > f...@snaggledworks.com> wrote: > > On 9/9/16 11:47 AM, Jack Howarth wrote: > > Hanspeter, > The current

[Fink-devel] xcode 8 fix for fink-buildenv-modules

2016-09-09 Thread Jack Howarth
Hanspeter, The current fink-buildenv-modules package is not savvy to the SDK changes in Xcode8 and requires the following change... --- /sw/lib/fink-buildenv-modules/base.sh 2016-08-09 17:49:45.0 -0400 +++ /sw/lib/fink-buildenv-modules/base.sh.new 2016-09-09 12:40:57.0 -0400

Re: [Fink-devel] Xcode8 build breakage for qt5

2016-09-09 Thread Jack Howarth
PM, Jack Howarth wrote: > Hanspeter, > I seem to have stumbled across a behavioral change in xcrun for > Xcode 8 on 10.10 which breaks the qt5-mac-qtbase-5.6.0-1 build. > > $ /usr/bin/xcrun -find xcrun > xcrun: error: unable to find utility "xcrun", not a

[Fink-devel] Xcode8 build breakage for qt5

2016-09-09 Thread Jack Howarth
Hanspeter, I seem to have stumbled across a behavioral change in xcrun for Xcode 8 on 10.10 which breaks the qt5-mac-qtbase-5.6.0-1 build. $ /usr/bin/xcrun -find xcrun xcrun: error: unable to find utility "xcrun", not a developer tool or in PATH fortunately this can be fixed with... diff

Re: [Fink-devel] grep-2.25-1

2016-08-16 Thread Jack Howarth
uffer (read) overrun". Jack On Tue, Aug 16, 2016 at 11:04 AM, Jack Howarth wrote: > Max, > I have uploaded packaging to update grep to the current 2.25 release > onto fink tracking at... > > https://sourceforge.net/p/fink/package-submissions/4745/ > > The only m

[Fink-devel] grep-2.25-1

2016-08-16 Thread Jack Howarth
Max, I have uploaded packaging to update grep to the current 2.25 release onto fink tracking at... https://sourceforge.net/p/fink/package-submissions/4745/ The only major change is adding a hunk to the patch for tests/pcre-jitstack to change the usage of 'base64 -d' to the more generic 'base

Re: [Fink-devel] make-4.2.1-2 to re-enable nls support

2016-08-14 Thread Jack Howarth
On Sun, Aug 14, 2016 at 11:48 AM, Jack Howarth wrote: > On Sun, Aug 14, 2016 at 10:23 AM, Max Horn wrote: > >> Jack, >> >> > On 12 Aug 2016, at 20:44, Jack Howarth >> wrote: >> > >> > Max, >> > It appears to be safe again to re-

Re: [Fink-devel] make-4.2.1-2 to re-enable nls support

2016-08-14 Thread Jack Howarth
On Sun, Aug 14, 2016 at 10:23 AM, Max Horn wrote: > Jack, > > > On 12 Aug 2016, at 20:44, Jack Howarth > wrote: > > > > Max, > > It appears to be safe again to re-enable the default nls support in > the make 4.2.1 build as upstream have fixed

[Fink-devel] make-4.2.1-2 to re-enable nls support

2016-08-12 Thread Jack Howarth
Max, It appears to be safe again to re-enable the default nls support in the make 4.2.1 build as upstream have fixed the signaling issue http://savannah.gnu.org/bugs/index.php?46261#comment12 Wed 09 Mar 2016 04:46:00 AM UTC, comment #12: I modified the implementation of the jobserver fun

Re: [Fink-devel] aclocal.m4 error compiling under 10.12

2016-08-08 Thread Jack Howarth
fix the > problem. In the end I, used the tip from Jack Howarth to get past the otool > errors: > > > cd /Library/Developer/CommandLineTools/usr/bin; sudo ln -sf otool-classic > otool > > > Since I added this workaround, I've successfully built a large number o

Re: [Fink-devel] xemacs-1:21.4.22-6

2016-07-01 Thread Jack Howarth
hat 'fink rebuild' will automatically reinstall the rebuilt packages). Jack > Sent from my iPhone > > On 30 Jun 2016, at 20:54, Jack Howarth wrote: > > > > On Thu, Jun 30, 2016 at 2:17 PM, Alexander Hansen < > alexanderk.han...@gmail.com> wrote:

Re: [Fink-devel] xemacs-1:21.4.22-6

2016-06-30 Thread Jack Howarth
On Thu, Jun 30, 2016 at 2:17 PM, Alexander Hansen < alexanderk.han...@gmail.com> wrote: > > On Jun 30, 2016, at 11:15, Giacomo Mauro D'Ariano > wrote: > > I tried on my second Mac: it doesn’t work!! > > You get the message: > > Couldn’t find per display information > > That error actually sounds

Re: [Fink-devel] xemacs-1:21.4.22-6

2016-06-29 Thread Jack Howarth
On Wed, Jun 29, 2016 at 9:56 AM, Alexander Hansen < alexanderk.han...@gmail.com> wrote: > > > On Jun 29, 2016, at 01:29, Giacomo Mauro D'Ariano > wrote: > > > > It is a known fact on the web that xemacs doesn’t work anymore with the > current version of XQuartz. > > > > Error: > > > > Error: atte

[Fink-devel] Xcode 8 linker now defaults to PIE executables for all deployment targets

2016-06-28 Thread Jack Howarth
Apple made one significant linker change in Xcode 8 which caused a build failure in the sbcl package. The linker now creates PIE executables regardless of deployment target setting. The previous workaround of passing '-mmacosx-version-min=10.6' to the compiler no longer suffices and an explic

Re: [Fink-devel] fink validation fixes for ghc libs packages

2016-06-18 Thread Jack Howarth
lds on Clang 8.0.0. Jack On Sat, Jun 18, 2016 at 2:58 PM, Jack Howarth wrote: > Brendan, > Most of the files in libs/ghc fail to pass fink validation due to > incorrect Shlibs entries. I am attaching a file, > fink_validation_fixes_libs_ghc.diff, containing the changes r

[Fink-devel] fink validation fixes for ghc libs packages

2016-06-18 Thread Jack Howarth
Brendan, Most of the files in libs/ghc fail to pass fink validation due to incorrect Shlibs entries. I am attaching a file, fink_validation_fixes_libs_ghc.diff, containing the changes required to solve those. Note that they also needed a revision bump as well as the shlibs entry fix as the cur

[Fink-devel] Xcode 8 beta on 10.11

2016-06-15 Thread Jack Howarth
If anyone is interested in testing the Xcode 8 beta for bootstrapping fink and building packages on fink, the direct url for the associated 10.11 Command Line Tools is https://developer.apple.com/services-account/download?path=/Developer_Tools/Command_Line_Tools_OS_X_10.11_for_Xcode_8_beta/Command

[Fink-devel] rstudio-desktop/rstudio-server-0.99.902-1 updates

2016-06-13 Thread Jack Howarth
BABA, I've posted updates for rstudio-desktop/rstudio-server-0.99.902-1 on fink tracking at https://sourceforge.net/p/fink/package-submissions/4674/ to allow the package to build on 10.11 by using fink openssl100 in the build and to switch the package from R 3.2 to 3.3. The rstudio-desktop.pat

[Fink-devel] 3.3 variant for rnmr-r

2016-06-13 Thread Jack Howarth
BABA, The simple info file change Index: sci/rnmr-r.info === RCS file: /cvsroot/fink/dists/10.9-libcxx/stable/main/finkinfo/sci/ rnmr-r.info,v retrieving revision 1.6 diff -r1.6 rnmr-r.info 4c4 < Type: r (3.2 3.1) --- > Type:

Re: [Fink-devel] missing dependencies from rmod updates

2016-06-13 Thread Jack Howarth
/R/%type_raw[rversion]/site-library/stringi/include > << to pass fink validation. Jack ps You always have to run these packages through the validator because even minor version updates can result in the CRAN packages starting to distribute headers. On Mon, Jun 13, 2016 at 9:22

Re: [Fink-devel] missing dependencies from rmod updates

2016-06-13 Thread Jack Howarth
Jack On Sun, Jun 12, 2016 at 9:04 PM, 美彦 馬場 wrote: > Jack, > > > 2016/06/13 5:52、Jack Howarth のメール: > > > Baba, > > It appears that during your recent rmod updates to support R 3.3 > that you neglected to commit the new dependencies on some of the package >

[Fink-devel] missing dependencies from rmod updates

2016-06-12 Thread Jack Howarth
Baba, It appears that during your recent rmod updates to support R 3.3 that you neglected to commit the new dependencies on some of the package updates. For example, WARNING: While resolving dependency "cran-magrittr-r33" for package "cran-stringr-r33-1.0.0-1", package "cran-magrittr-r33" was

[Fink-devel] Fwd: Solved: XEmacs no longer works with XQuartz 2.7.9

2016-06-07 Thread Jack Howarth
-- Forwarded message -- From: Jack Howarth Date: Tue, Jun 7, 2016 at 2:06 PM Subject: Re: [Fink-devel] Solved: XEmacs no longer works with XQuartz 2.7.9 To: Alexander Hansen An alternate, but equally ugly approach, is to build libxaw3dxft with -flat_namespace using... --- /sw

Re: [Fink-devel] tar 1.29 breaks fink packager

2016-06-05 Thread Jack Howarth
On Sun, Jun 5, 2016 at 11:48 AM, Jack Howarth wrote: > > > On Sun, Jun 5, 2016 at 11:28 AM, TheSin wrote: > >> I haven’t tried yet so I’m not seeing it yet. But I did have lots of >> problems with gnu vs bad tar when I started updating dpkg years ago, so I >> know

Re: [Fink-devel] tar 1.29 breaks fink packager

2016-06-05 Thread Jack Howarth
nder the new tar 1.29 release so we can report back upstream on that permutation. > --- > TS > http://www.southofheaven.org/ > Life begins and ends with chaos, live between the chaos! > > > On Jun 5, 2016, at 9:00 AM, Jack Howarth > wrote: > > > > > >

Re: [Fink-devel] tar 1.29 breaks fink packager

2016-06-05 Thread Jack Howarth
e doesn't produce the root level DEBIAN directory. So we definitely should try to create a test case for reporting back upstream. Jack > TS > http://www.southofheaven.org/ > Life begins and ends with chaos, live between the chaos! > > > On Jun 5, 2016, at 8:35 AM,

Re: [Fink-devel] tar 1.29 breaks fink packager

2016-06-05 Thread Jack Howarth
invocation of tar with options that no longer behaves as expected). Jack --- > TS > http://www.southofheaven.org/ > Life begins and ends with chaos, live between the chaos! > > > On Jun 5, 2016, at 8:35 AM, Jack Howarth > wrote: > > > > The new tar 1.2

[Fink-devel] tar 1.29 breaks fink packager

2016-06-05 Thread Jack Howarth
The new tar 1.29 release (which is available on fink tracker at https://sourceforge.net/p/fink/package-submissions/4664/) passes its test suite cleanly on x86_64-apple-darwin15 but causes fink to exhibit broken behavior when installed. The problem is that, when a package is built under the new

Re: [Fink-devel] Solved: XEmacs no longer works with XQuartz 2.7.9

2016-06-02 Thread Jack Howarth
On Thu, Jun 2, 2016 at 10:57 AM, Stefan Bruda wrote: > At 10:02 -0400 on 2016-6-2 Jack Howarth wrote: > > > > So I assume you are talking about using extensions to emacs like > > https://github.com/Malabarba/spinner.el/blob/master/README.org > > rather than j

Re: [Fink-devel] XEmacs no longer works with XQuartz 2.7.9

2016-06-02 Thread Jack Howarth
On Wed, Jun 1, 2016 at 11:47 PM, Stefan Bruda wrote: > Hello, > > At 19:49 -0400 on 2016-6-1 Jack Howarth wrote: > > > > Can you try building the packaging posted on fink tracker at > > https://sourceforge.net/p/fink/package-submissions/4663/ and see if >

Re: [Fink-devel] XEmacs does not run withno longer works with XQuartz 2.7.9

2016-06-01 Thread Jack Howarth
Stefan, Can you try building the packaging posted on fink tracker at https://sourceforge.net/p/fink/package-submissions/4663/ and see if that helps? This packaging addresses the 'missing sentinel in function call' warnings, which according to http://stackoverflow.com/questions/2407605/c-warni

Re: [Fink-devel] missing dependency and a bug in (fsf-)gdb

2016-03-03 Thread Jack Howarth
The existing gdb package containing fef-gdb uses a shell script to alert the user that they need to code sign the program in order for it to run properly as non-root. The info file has instructions for this... To execute fsf-gdb without using sudo, the binary needs to be codesigned on each mach

Re: [Fink-devel] afni sources

2016-02-17 Thread Jack Howarth
Proposed fix for location of sources and legacy flat_namespace libXt in https://sourceforge.net/p/fink/package-submissions/4610/ On Wed, Feb 17, 2016 at 11:18 AM, Hanspeter Niederstrasser < f...@snaggledworks.com> wrote: > On Wed, February 17, 2016 10:10 am, Jack Howarth wrote: >

Re: [Fink-devel] afni sources

2016-02-17 Thread Jack Howarth
17, 2016 9:34 am, Jack Howarth wrote: > > While adjusting afni-2010.10.19.1028-2 to build against the legacy > > flat_namespace libXt in the upcoming Xquartz 2.7.9 release, I noticed > that > > the package's source mirror is no longer available at > > http://mrires.

[Fink-devel] afni sources

2016-02-17 Thread Jack Howarth
While adjusting afni-2010.10.19.1028-2 to build against the legacy flat_namespace libXt in the upcoming Xquartz 2.7.9 release, I noticed that the package's source mirror is no longer available at http://mrires.stjosham.on.ca/~addavis/. Those sources should be uploaded to the fink mirror if anyone

Re: [Fink-devel] procmail for 10.11

2016-01-05 Thread Jack Howarth
Greg, Daniel Macks used to maintain a procmail-3.22-1 package which is still available in 10.4/10.5-EOL at... http://fink.cvs.sourceforge.net/viewvc/fink/dists/10.4/stable/main/finkinfo/10.5-EOL/utils/procmail.info http://fink.cvs.sourceforge.net/viewvc/fink/dists/10.4/stable/main/finkinfo/

Re: [Fink-devel] coreutils-default missing base64

2015-12-27 Thread Jack Howarth
Jesse, I am seeing /usr/bin/base64 present on El Capitan and... $ lsbom /System/Library/Receipts/com.apple.pkg.Essentials.bom | grep "\/usr\/bin\/base64" ./usr/bin/base64 100755 0/0 23136 2685920996 shows it to still be part of the Essentials package. Jack On Sun, Dec 27, 2015 at 3:09

Re: [Fink-devel] fix for remaining fink make failures on 10.11

2015-10-25 Thread Jack Howarth
On Sun, Oct 25, 2015 at 3:06 PM, Jack Howarth wrote: > > > On Sat, Oct 24, 2015 at 11:30 AM, Max Horn wrote: > >> Thanks for all the work and testing. I have no committed a revised >> version of the .info file, which drops the patch and uses --disable-nls. >>

Re: [Fink-devel] fix for remaining fink make failures on 10.11

2015-10-25 Thread Jack Howarth
ely across the entire code path. Jack > > On 24.10.2015, at 12:32, Jack Howarth wrote: > > > > > > > > On Sat, Oct 24, 2015 at 6:12 AM, Martin Costabel > wrote: > > On 24/10/15 08:22, Jack Howarth wrote: > > [] > >Since we don't

Re: [Fink-devel] fix for remaining fink make failures on 10.11

2015-10-24 Thread Jack Howarth
On Sat, Oct 24, 2015 at 6:12 AM, Martin Costabel wrote: > On 24/10/15 08:22, Jack Howarth wrote: > [] > >>Since we don't want to remove the CoreFoundation support from >> libgettext8-shlibs and gettext-tools, the obvious solution is to use the >&g

Re: [Fink-devel] fix for remaining fink make failures on 10.11

2015-10-23 Thread Jack Howarth
A cursory look through the sources of CF-1153.18 from the 10.10.5 Apple OpenSource release shows that there isn't any effort made in those source files to handle EINTR error codes returned on read, write and (f)stat calls. On Sat, Oct 24, 2015 at 12:48 AM, Jack Howarth wrote: > Max, &

Re: [Fink-devel] fix for remaining fink make failures on 10.11

2015-10-23 Thread Jack Howarth
on system calls. pps This actually isn't that surprising. On MacPorts, we have to use the -CoreFoundation variant of their tcl package to allow pymol to run properly and pymol does a fork()/exec() like make does. On Fri, Oct 23, 2015 at 4:30 PM, Jack Howarth wrote: > Since make 4.1 built

Re: [Fink-devel] fix for remaining fink make failures on 10.11

2015-10-23 Thread Jack Howarth
o wrapper while also looping on fstat with the missing check for EINTR added. Jack ps In theory, we probably should also check the i/o system calls for missing EINTR checks in /sw/lib/libiconv.2.dylib since libintl.8.dylib is linked against that. On Fri, Oct 23, 2015 at 3:22 PM, Jac

[Fink-devel] fix for remaining fink make failures on 10.11

2015-10-23 Thread Jack Howarth
Max, I did an exhaustive check by adding EINTRLOOP macros to every single POSIX system call in the make 4.1 sources which can return EINTR. None of that helped eliminate the build failures here in openmpi and gcc5. I finally stumbled in a workaround that suppresses the failures. Passing --dis

Re: [Fink-devel] fix for make 4.1 on 10.12

2015-10-21 Thread Jack Howarth
/4562/ so we can start to accumulate more testing on the completeness of this fix for 10.11 (outside of the gcc5 libjava build). So far it fixes the libcurl4 and r-base32 builds here with fink make on 10.11. Jack On Wed, Oct 21, 2015 at 6:29 PM, Jack Howarth wrote: > > &g

Re: [Fink-devel] fix for make 4.1 on 10.12

2015-10-21 Thread Jack Howarth
On Wed, Oct 21, 2015 at 10:09 AM, Max Horn wrote: > Hi Jack, > > thanks for analyzing this. I made some minor tweaks to the .info file you > sent (mainly: update the DescPort text to explain the patch). I was about > to commit it, but then read that there are still issues. > > For the time being

Re: [Fink-devel] fix for make 4.1 on 10.12

2015-10-21 Thread Jack Howarth
p in set_child_handler_action_flags(). and so the EINTRLOOP() macro fix would be inappropriate there. Sigh, On Wed, Oct 21, 2015 at 9:02 AM, Jack Howarth wrote: > It looks like we are still missing some instances of EINTRLOOP() macro > usage. The gcc5 build with fink make still fails with the proposed fix >

Re: [Fink-devel] fix for make 4.1 on 10.12

2015-10-21 Thread Jack Howarth
2 PM, Jack Howarth wrote: > Of course the 10.12 should be 10.11 (doh). FYI, the original discussion of > the requirement for the EINTRLOOP() macros can be found at... > > https://lists.gnu.org/archive/html/make-alpha/2001-05/msg8.html > > On Tue, Oct 20, 2015 at 10:29 PM,

Re: [Fink-devel] fix for make 4.1 on 10.12

2015-10-20 Thread Jack Howarth
Of course the 10.12 should be 10.11 (doh). FYI, the original discussion of the requirement for the EINTRLOOP() macros can be found at... https://lists.gnu.org/archive/html/make-alpha/2001-05/msg8.html On Tue, Oct 20, 2015 at 10:29 PM, Jack Howarth wrote: > FYI, I've also open

Re: [Fink-devel] fix for make 4.1 on 10.12

2015-10-20 Thread Jack Howarth
FYI, I've also opened a bug report at... https://savannah.gnu.org/bugs/index.php?46261 and posted the proposed fix there as well. On Tue, Oct 20, 2015 at 10:16 PM, Jack Howarth wrote: > The attached packaging adds the change... > > diff -uNr make-4.1.orig/main.c make-4.1/main.c

[Fink-devel] fix for make 4.1 on 10.12

2015-10-20 Thread Jack Howarth
The attached packaging adds the change... diff -uNr make-4.1.orig/main.c make-4.1/main.c --- make-4.1.orig/main.c2014-10-05 12:24:51.0 -0400 +++ make-4.1/main.c 2015-10-20 22:08:00.0 -0400 @@ -3364,9 +3364,12 @@ #else /* Close the write side, so the read() won't

Re: [Fink-devel] tentative cause of make 4.1 regressions under fink

2015-10-20 Thread Jack Howarth
(etc). On Tue, Oct 20, 2015 at 9:03 PM, Jack Howarth wrote: > This is starting to make sense. The code section that I have been > suspecting in make 4.1 (which is the only place that resets the job_slots > to 1) is... > > #ifndef WINDOWS32 > #ifdef HAVE_FCNTL > # define F

Re: [Fink-devel] tentative cause of make 4.1 regressions under fink

2015-10-20 Thread Jack Howarth
to be undefined in the fink make 4.1 build? On Tue, Oct 20, 2015 at 8:20 PM, Jack Howarth wrote: > So far my testing on 10.12 suggests that the trigger for the > regression in using fink make 4.1 under 10.12 is due to the flock() usage > in Services.pm. The most reliable reproducer o

[Fink-devel] tentative cause of make 4.1 regressions under fink

2015-10-20 Thread Jack Howarth
So far my testing on 10.12 suggests that the trigger for the regression in using fink make 4.1 under 10.12 is due to the flock() usage in Services.pm. The most reliable reproducer of this regression on my system has been the InfoTest of libcurl4 which always fails in the compilation of the test

[Fink-devel] debugging fink make under perl

2015-10-20 Thread Jack Howarth
Any thoughts on the following issue? In an attempt to pinpoint the exact trigger of the fink make failures under the system perl, I have tried the following experiment in the past. Starting with a failing build (in this case the InfoTest of libcurl4) with fink make installed, I executed 'ps -le

Re: [Fink-devel] make 4.x vs fink on 10.11

2015-10-19 Thread Jack Howarth
Another observation that seems to point at SIGCHLD handling being the issue is the failure seen in building texinfo under fink make on 10.11 make[5]: *** read jobs pipe: No such file or directory. Stop. make[5]: *** Waiting for unfinished jobs during the InfoTest. Note that in the make 4

Re: [Fink-devel] make 4.x vs fink on 10.11

2015-10-18 Thread Jack Howarth
On Sun, Oct 18, 2015 at 1:37 PM, Jack Howarth wrote: > On Sat, Oct 17, 2015 at 8:01 PM, Jack Howarth > wrote: > >> Looking a bit more at the failures of make 4.x under fink, I noticed that >> fink uses the perl system() call and MacPorts uses tcl's system() call as

Re: [Fink-devel] make 4.x vs fink on 10.11

2015-10-18 Thread Jack Howarth
On Sat, Oct 17, 2015 at 8:01 PM, Jack Howarth wrote: > Looking a bit more at the failures of make 4.x under fink, I noticed that > fink uses the perl system() call and MacPorts uses tcl's system() call as > well. However the perl documentation has the following comment... > >

[Fink-devel] make 4.x vs fink on 10.11

2015-10-17 Thread Jack Howarth
Looking a bit more at the failures of make 4.x under fink, I noticed that fink uses the perl system() call and MacPorts uses tcl's system() call as well. However the perl documentation has the following comment... Since system does a fork and wait it may affect a SIGCHLD handler. See perlipc for d

Re: [Fink-devel] A few 10.11 glitches and possible workarounds

2015-10-14 Thread Jack Howarth
On Wed, Oct 14, 2015 at 5:24 PM, Alexander Hansen < alexanderk.han...@gmail.com> wrote: > > On Oct 1, 2015, at 12:24, Alexander Hansen > wrote: > > > On Oct 1, 2015, at 11:41, Alexander Hansen > wrote: > > > On Oct 1, 2015, at 11:24, Jack Howarth wrote: >

Re: [Fink-devel] java16 on El Capitan

2015-10-03 Thread Jack Howarth
On Sat, Oct 3, 2015 at 2:18 PM, Hanspeter Niederstrasser < f...@snaggledworks.com> wrote: > If I'm reading fink-virtual-packages correctly, 1.6 was the last version > provided by Apple, and 1.7+ must be gotten from Oracle. Is that correct? > When Martin's fix gets released, would best practices

Re: [Fink-devel] A few 10.11 glitches and possible workarounds

2015-10-01 Thread Jack Howarth
On Thu, Oct 1, 2015 at 2:41 PM, Alexander Hansen < alexanderk.han...@gmail.com> wrote: > > On Oct 1, 2015, at 11:24, Jack Howarth wrote: > > > > On Thu, Oct 1, 2015 at 12:02 PM, Jack Howarth > wrote: > >> >> >> On Thu, Oct 1, 2015 at 12:33 AM, Wil

Re: [Fink-devel] A few 10.11 glitches and possible workarounds

2015-10-01 Thread Jack Howarth
On Thu, Oct 1, 2015 at 12:02 PM, Jack Howarth wrote: > > > On Thu, Oct 1, 2015 at 12:33 AM, William G. Scott > wrote: > >> In the course of building some of my packages, a few dependencies failed >> to compile, requiring minor tweaks: >> >> gtk+2 — I

Re: [Fink-devel] A few 10.11 glitches and possible workarounds

2015-10-01 Thread Jack Howarth
On Thu, Oct 1, 2015 at 12:33 AM, William G. Scott wrote: > In the course of building some of my packages, a few dependencies failed > to compile, requiring minor tweaks: > > gtk+2 — I had to change to UseMaxBuildJobs: false > libvpx14 — I had to change to UseMaxBuildJobs: false > Bill, I

[Fink-devel] unmaintaining packages

2015-09-27 Thread Jack Howarth
Alexander, Please consider all of my packages as unmaintained and reassign them as Maintainer: None . Thanks in advance. Jack -- ___ Fink-devel mailing list Fink-de

[Fink-devel] wxwidgets300.info and deprecating wxcocoa295.info/wxwidgets300-cocoa.info in 10.9-libc++

2015-09-27 Thread Jack Howarth
Alexander, Both the 10.7 and 10.9-libc++ trees need the change... Index: wxwidgets300.info === RCS file: /cvsroot/fink/dists/10.9-libcxx/stable/main/finkinfo/libs/ wxwidgets300.info,v retrieving revision 1.2 diff -r1.2 wxwidgets

[Fink-devel] box.info, box-0.2.2.info and box-0.3.4.info

2015-09-26 Thread Jack Howarth
Daniel, Is there any reason to maintain the box-0.2.2.info and box-0.3.4.info packaging in the 10.9-libc++ tree? I don't see any packages currently in the 10.9-libc++ tree with a BuildDepends on libboxcore0.2 or libboxcore0.3. Jack -

[Fink-devel] pruning ruby packaging in 10.9-libc++ tree

2015-09-26 Thread Jack Howarth
Daniel, Any reason why we can't prune back the five different ruby packages in the 10.9-libc++ to just the most current ruby22 packaging? I only see a BuildConflicts on these packages in net/epic5.info and the legacy commented BuildDepends line in languages/swig.info and languages/swig302.info

Re: [Fink-devel] deprecating openexr6/ilmbase out of 10.9-libc++ tree

2015-09-22 Thread Jack Howarth
On Tue, Sep 22, 2015 at 9:52 AM, Jack Howarth wrote: > Daniel, > Thats is > > On Tue, Sep 22, 2015 at 9:35 AM, Daniel Johnson > wrote: > >> >> > On Sep 20, 2015, at 12:08 PM, Jack Howarth >> wrote: >> > >> > There is no reaso

Re: [Fink-devel] deprecating openexr6/ilmbase out of 10.9-libc++ tree

2015-09-22 Thread Jack Howarth
Daniel, Thats is On Tue, Sep 22, 2015 at 9:35 AM, Daniel Johnson wrote: > > > On Sep 20, 2015, at 12:08 PM, Jack Howarth > wrote: > > > > There is no reason to carry along the ilmbase and libopenexr6 > packaging into the 10.9-libc++ tree when the newer i

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