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Subject: Re: [Fink-devel] arb can't find arb_pt_server Date: Tuesday 24 June 2008 From: Pat Schloss <[EMAIL PROTECTED]> To: Alexander Hansen <[EMAIL PROTECTED]> Thanks, Alexander. I got this to work - sudo ln -s /sw/bin /sw/share/arb/bin Pat On Jun 24, 2008, at 9:23 AM, Alexander Hansen wrote: > On Tuesday 24 June 2008 08:47:48 Pat Schloss wrote: >> Hi, >> >> I'm running the latest release of arb in leopard and encountering >> problems >> when I try to create a pt_server. arb generates the following >> command in >> the terminal... >> >> Action: '($ARBHOME/bin/arb_pt_server -D/sw/share/arb/lib/pts/ >> SSU_rRNA.arb >> -T:3032) &' >> sh: /sw/share/arb/bin/arb_pt_server: No such file or directory >> >> The path is obviously wrong. I think it should be /sw/bin/ >> arb_pt_server - >> not $ARBHOME/bin/arb_pt_server. Any ideas on how to change this? It >> doesn't seem to be an issue with the linux version. >> >> Thanks, >> pat >> > > Hmmm...on my system arb creates a symbolic link > > /sw/share/arb/lib/bin -> /sw/bin > > You could try resetting ARBHOME manually, e.g. under bash: > > export ARBHOME=/sw/share/arb/lib > > to match the symlink, and so then $ARBHOME/bin would point to the > right place. > The other option to try, if that doesn't work, would be to put in a > different > symlink: > > sudo ln -s /sw/bin /sw/share/arb/bin > > and keep ARBHOME the same. > > I'm not actually shure which approach is needed (since I'm not a > user of the > package myself), but clearly there appears to be a disjunction between > ARBHOME and that convenience symlink. Let us know what you find > out so that > we can update the package accordingly. -- Department of Microbiology 203 Morrill Science Center IVN The University of Massachusetts 639 North Pleasant Street Amherst, MA 01003 (tel) 413.545.6751 (fax) 413.545.1578 http://www.bio.umass.edu/micro/faculty/schloss.html ======================================================================== === ------------------------------------------------------- ------------------------------------------------------------------------- Check out the new SourceForge.net Marketplace. It's the best place to buy or sell services for just about anything Open Source. http://sourceforge.net/services/buy/index.php _______________________________________________ Fink-devel mailing list Fink-devel@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.devel
