I had a think about it the speed issues and fink installed CcpNmr. Assuming you weer using the same python version of CcpNmr (ccpnmr- py25), the speed issue could be down to having your .py files not byte-compiled. This is often the case because the fink directory is only root enabled. Once you update the .py files and run the program as a non-root user, it would not get byte-compiled, and this would be the case till that particular file is used with root privileges.
Hence, fink installed CcpNmr comes with a few scripts that you have to run like any usual command from the command line; run ccpnmr- bytecompile (after any of the .py files are update from within analysis) & ccpnmr-postupdate (after any of the .c and/or .py files are update from within analysis) Hope this solves the problem. Please keep me updated on this. On 12 Jan 2007, at 19:37, Johnny Croy wrote: > Hello again. > > I posted earlier about CCPnmr running slow on my powerbook, but > found that > completely removing fink and reinstalling it helped tons in terms > of speed. > Instead of using the fink version of analysis, the package > downloaded from > the CCPNMR site is much better (speed wise). > > I am having one issue that I don't know how to fix. After staring > analysis > I get a number of errors that read, > > python2.5(6235) malloc: *** Deallocation of a pointer not malloced: > 0x50db70; This could be a double free(), or free() called with the > middle of > an allocated block; Try setting environment variable MallocHelp to > see tools > to help debug > > Any ideas of what may be causing this? It apparently doesn't have any > significant consequences when running analysis (at least yet!), so > I will > let you all know if I run into further problems. For reference, I > am using > the current analysis package with the fink compiled tcl/tk, > python2.5 and > mesa packages. > > -J ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys - and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Fink-devel mailing list Fink-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-devel
