Well, I am getting so senile I didn't even remember that something other than
the plug-ins depended on gfortran until I tried to make a lite one. I still
might, because it would be kind of cool to have one that uses the aqua-tk
interface…
On Jul 31, 2011, at 4:27 PM, Koen van der Drift wrote:
Bill,
Thanks for this explanation - with this excellent info it only seems logical to
include scipy and gcc to the package, no need to make a lite version, as far as
I am concerned. Sorry for the noise :)
- Koen.
On Jul 31, 2011, at 7:21 PM, William G. Scott wrote:
> Dear Koen et al:
>
> Th
Dear Koen et al:
The reason for the inclusion of scipy it to support two pymol plugins: APBS
(an electrostatics program that is quite popular amongst structural molecular
biologists) and a py-nmr plugin (of use to NMR spectroscopists). There may be
other reasons as well that I am not aware of
On Jul 30, 2011, at 5:13 AM, Hanspeter Niederstrasser wrote:
> On 7/29/2011 9:52 PM, Koen van der Drift wrote:
>>
>> On Jul 29, 2011, at 5:27 PM, Michael Lerner wrote:
>>
>>> Newer versions of PyMOL include several modules (scipy, numpy, matplotlib).
>>> My understanding is that this was done
On 7/29/2011 9:52 PM, Koen van der Drift wrote:
>
> On Jul 29, 2011, at 5:27 PM, Michael Lerner wrote:
>
>> Newer versions of PyMOL include several modules (scipy, numpy, matplotlib).
>> My understanding is that this was done to make it easier to write and
>> support plugins and extensions. I don
Which newer version of pymol are you referring to, the one in fink (1.4) has no
mention of scipy or matplotlib in the sourcecode, only numpy.
- Koen.
On Jul 29, 2011, at 5:27 PM, Michael Lerner wrote:
> Newer versions of PyMOL include several modules (scipy, numpy, matplotlib).
> My understan
Hi,
I recently switched to Lion, and tried to install pymol through fink.
I noticed that the dependency on numpy has been changed into one on
scipy. Scipy pulls in a slew of additional dependencies, including
gcc46, making it an elaborate install process. As far as I know,
there is no need for p
