Re: [Freesurfer] mri_convert orientation problem

2004-11-11 Thread Doug Greve
Hi Aaron, does the file.img have an accompanying file.mat? This defines what's left and right. If so, where did it come from and do you think it's right? There are no options in mri_convert to flip LR, but you can specify the direction cosines on the command-line with something like: -iid

[Freesurfer] functional overlay

2004-11-11 Thread Joongnam Yang
Hi all, If someone can give me help, it would be greately appreciated. in csurf GUI, I choose New Functional, and I give it a name. (1) The name is entirely new for analysis or is it the directory that contains functional scan. If I give it a name, it asks for Now, locate the single subject

Re: [Freesurfer] Problems installing freesurfer on Mac OS X (Darwin)

2004-11-11 Thread Kevin Teich
If you launch tixwish, can you then type the following command and get this result? % info commands tix tix % Try commenting out the line in csurf tht calls tixwish4.1.7.4 and replacing it with the following: exec tixwish $0 ${1+$@} On Thu, 11 Nov 2004, Catherine Schevon wrote: Hi,

Re: [Freesurfer] functional overlay

2004-11-11 Thread Bruce Fischl
Hi Nam, what format are your functional data in? You should be able to load them directly in tksurfer using file-load functional overlay. cheers, Bruce On Thu, 11 Nov 2004, Joongnam Yang wrote: Hi all, If someone can give me help, it would be greately appreciated. in csurf GUI, I choose New