That worked, thanks, Doug.
To expand on the labels issue, from my understanding, the labels are used to
check that the registration worked, and that these are automatically created.
I don't have any files in my labels directory.
Do you need to run parcellate_subject to get them?
Is there any docu
use the one in dev not std env
Elizabeth Fenstermacher wrote:
Hello All,
I have a number of jobs that I will be running through recon-all-nmr
-stage1 in the next few days. I tried using the -disable-autoseg
flag, but it seems not to work as the jobs I submitted this morning
have now run
Add -noavglabels as the *last* arg to the command-line
Fornito, Alexander wrote:
Hi all,
I've created my the fional surface for some people and am trying to register
them using recon-all -stage4b.However, I get an error message saying that I
needed to do average labels (see output below). I'
Hi all,
I've created my the fional surface for some people and am trying to register
them using recon-all -stage4b.However, I get an error message saying that I
needed to do average labels (see output below). I've noticed that I get the
same message if I try to morph_subject, except morph_subjec
I'm pretty sure that I have gotten it to work successfully placing the
flag after -stage1. Eliz, are you using a frozen version for this? the
flag wasn't working for a while, it was fixed recently, last week or so.
I'd suggest you run this if you are using an old frozen version:
I think you need to put -disable-autoseg in front of -stage1.
-Xiao
On Tue, 7 Jun 2005, Elizabeth Fenstermacher wrote:
Hello All,
I have a number of jobs that I will be running through recon-all-nmr
-stage1 in the next few days. I tried using the -disable-autoseg flag, but
it seems not to
Hello All,
I have a number of jobs that I will be running through recon-all-nmr
-stage1 in the next few days. I tried using the -disable-autoseg flag,
but it seems not to work as the jobs I submitted this morning have now run
for 50 minutes.
The command line as I typed it was
pbsubmit -c
On Monday 06 June 2005 17:41, Andrew H Bell wrote:
>
> However, when I check, the file is there but is listed in lower-case
> (i.e., "cor-001"). I cannot rename the file to upper-case - the file
> already exists...
>
You might try renaming the files to upper case in this manner:
(In a Windows co
