[Freesurfer] recon-all error

2005-10-02 Thread Morgan Hough
I downloaded the latest freesurfer-dev and I was testing out my install with recon-all -autorecon-all -subjid bert and I am getting this error. mri_convert nu4.mnc nu.mgz mincRead(): can't find file /var/scratch11/mhough/subjects/bert/mri/nu4.mnc reading from nu4.mnc... ERROR: converting nu to

Re: [Freesurfer] recon-all error

2005-10-02 Thread Bruce Fischl
Hi Morgan, can you send us the entire recon-all.log file? thanks, Bruce On Sun, 2 Oct 2005, Morgan Hough wrote: I downloaded the latest freesurfer-dev and I was testing out my install with recon-all -autorecon-all -subjid bert and I am getting this error. mri_convert nu4.mnc nu.mgz

Re: [Freesurfer] make_average_subject error?

2005-10-02 Thread Brian Schweinsburg, Ph.D.
Title: Re: [Freesurfer] make_average_subject error? Hi Doug, I changed the flags to efxv as you recommend, and here is the output for make_average_subject, make_average_volume and make_average_surface. The script doesnt seem to be accepting my command line arguments. I am using the current dev