Hi Goulven,
could you send us an image with some arrows on it?
cheers,
Bruce
On Wed, 2 Nov 2005,
Goulven Josse wrote:
Dear Freesurfers,
We have used the automated parcellation (Fischl et al, 2004) in several
subjects and noticed in some cases labeling of the lateral part of a gyrus (i
Would you consider providing a .pdf version of the web document
FreeSurfer Tutorial: Morphometry and Reconstruction that could be
easily downloaded and printed out? We occasionally teach a FS class
here at the NIH and I know it helps to have a paper-version of the
manual to refer to (which is
Well, if the volumes do not line up, then you're register.dat is wrong.
Use tkregister2 to register the original functinoal to the anatomical
(use the --regheader the first time), then use mri_vol2vol to resample
the functional into anat space (make sure to use the --invxfm flag with
To eliminate the possibility of a SUMA/FreeSurfer incompatibility, can
you send pics displayed in tksurfer? Also, to clarify, this is a label
for a subject shown on that subject (ie, you did not map the label from
one subject to another)?
thanks
doug
Goulven Josse wrote:
Hi,
I
Hi Goulven,
can you send the recon-all.log file for one of these subjects? What
version of freesurfer are you using?
Bruce
On Thu, 3 Nov 2005, Goulven Josse
wrote:
On Nov 3, 2005, at 10:59 AM, Doug Greve wrote:
To eliminate the possibility of a SUMA/FreeSurfer incompatibility, can you
Hi,
I was just wandering what determines the area value assigned to a given vertex.
Is it the average area of the faces of the triangles to which it is attached?
If so, what determines the area of the traingle faces?
Do the values in the ?.area file reflect regional variations in surface area?
Hi Goulven,
There should be a recon-all.log file under the
$SUBJECTS_DIR/subject/script/
directory, if you processed the data using the recon-all script.
The log files you attached were produced by the tools to visuallize the
results, not by the programs that create the label result. Thus we
