[Freesurfer] having problem in running recon-all...

[Shahabuddin Ansari]

Hello,

 

I am having problem in running the following command:

 

recon-all -i 2996926_02.img -s 2996926_02

I used to run the command before without any problem. Recently my linux has been updated to suse version, would that be a source of problem. The console display the following error:

 

INFO: SUBJECTS_DIR is /ensc/IMAGE/opt/FREESURFER/subjects
Actual FREESURFER_HOME /ensc/IMAGE/opt/FREESURFER
Linux ilpc5 2.6.13-15.10-bigsmp #1 SMP Fri May 12 16:36:41 UTC 2006 i686 i686 i386 GNU/Linux
mri_convert: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mri_convert: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mri_normalize: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mri_watershed: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mri_segment: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mri_fill: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mri_tessellate: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mris_smooth: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mris_inflate: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mris_sphere: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mris_fix_topology: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mris_euler_number: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mris_make_surfaces: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mris_register: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mrisp_paint: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mri_label2label: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mri_em_register: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mri_ca_normalize: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mri_ca_register: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
mri_ca_label: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
/ensc/IMAGE/opt/FREESURFER/subjects/2996926_02

 mri_convert /ensc/IMAGE4/PROJECTS/HD_AYLWARD/DATA/PATIENTDATA/SHAHAB/2996926_02/2996926_02.img /ensc/IMAGE/opt/FREESURFER/subjects/2996926_02/mri/orig/001.mgz

mri_convert: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
Linux ilpc5 2.6.13-15.10-bigsmp #1 SMP Fri May 12 16:36:41 UTC 2006 i686 i686 i386 GNU/Linux

recon-all exited with ERRORS at Sun Aug  6 19:08:34 PDT 2006

Shahab

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