Re: [Freesurfer] problem with mris_anatomical_stats

2007-01-09 Thread A. Douiri
Hi Nick Thanks mris_fix_topology works now! But i have a similar bug a step later with: mris_make_surfaces Can you please check it. Thans for your help A Nick Schmansky wrote: Abdel, Indeed mris_fix_topology had the same bug as mris_anatomical_stats (when running on Slackware Linux). I've

Re: [Freesurfer] problem with mris_anatomical_stats

2007-01-09 Thread Nick Schmansky
Abdel, I've put a fixed version of mris_make_surfaces for centos4 here: http://surfer.nmr.mgh.harvard.edu/pub/dist/ Also, I've checked the remaining downstream binaries (run by recon-all) and confirmed that the bug does not exist in those (hopefully!). Nick On Tue, 2007-01-09 at 16:11

Re: [Freesurfer] Freesurfer Installation Problem

2007-01-09 Thread Nick Schmansky
Jaakko, The message about the missing talairach.xfm file can be ignored (unless things stop completely and issue an error message). The code performs a relative path search to find the file if it doesnt find it in the hard- coded path (a historical remnant). About the Tcl problem, which Linux

[Freesurfer] Difficulties with segmentation follow-up

2007-01-09 Thread Jeffrey Spielberg
Hi, I sent a message to the forum last June regarding a problem with segmentation of the acc we were running into. We kept having areas of the rostral and caudal acc labeled as corpus callosum or unlabelled subcortical. I got a reply that this was being worked on and I was wondering if this is

Re: [Freesurfer] How to get masks on cerebral white matter and cortex?

2007-01-09 Thread Kai Li
Hi Doug, Is the executable you provided below a rh9 build? It seems that it isn't. It reported an error indicating it might be a build for something else. Could you please send a rh9 build? /mri_vol2vol: error while loading shared libraries: libstdc++.so.6: cannot open shared object

Re: [Freesurfer] How to get masks on cerebral white matter and cortex?

2007-01-09 Thread Doug Greve
I'm sure it was a centos build. Nick, do we have an rh9 build that we get a copy of mri_vol2vol to give to Kai? Kai Li wrote: Hi Doug, Is the executable you provided below a rh9 build? It seems that it isn't. It reported an error indicating it might be a build for something else. Could