hi,
I have a problem.
I analysis my data using qdec.
But, after runing the command (recon-all -s subject1 -qcache)
I can't find the qdec.table.dat and the discrete factor files.
The following commands that I type to run.
First, I set SUBJECTS_DIR to a directory.
setenv SUBJECTS_DIR $SUBJECTS_DIR
Hi Mike,
I've run into the same problem you see in number 1 - the SPLINE_CUBIC_SET -
Fatal Error!, with a fine talaraich. I was able to fix this by using the
-no1d flag in mri_normalize. You can add this as an xopt to that subject so
that it is always run:
http://surfer.nmr.mgh.harvard.edu/fswik
Hello,
We recently just ran 80 elderly brains through -autorecon1 using FS
v4.0.2, and encountered 3 different types of errors that we are not
entirely sure how to handle:
(1) During mri_normalize of 1 subject we encountered:
SPLINE_CUBIC_SET - Fatal error!
The number of data points N must be a
Hey Alex,
Just from looking at the first two lines of your environment variables
I think you might have forgot the 's' on Applications for
FREESURFER_HOME.
>>>
String[] env = {"FREESURFER_HOME=/Application/freesurfer",
"FSFAST_HOME=/Applications/freesurfer/fsfast",
mishkin
On M
Hi Mishkin,
basically, yes. The spherical mapping energy function is pretty much a
subset of the spherical registration one (with the folding geometry
correlation term taken out).
Inflation = spring term + distance term
spherical mapping = distance term + topology term (orie
Hi Ronald,
that's the right way to edit the annotations, but it won't change the
registration at all.
cheers,
Bruce
On Tue, 26 Feb 2008, Pierson, Ronald K wrote:
Forgive me if this has been covered before, but I was unable to find an answer
after searching for a bit. I have been considerin
Forgive me if this has been covered before, but I was unable to find an answer
after searching for a bit. I have been considering editing the final surface
parcellation for those scans that have problems in certain areas. Can these
corrections then be used to correct the surface registration f
