Hi Nick-
I've run into the same problem recently and am looking at piping my FreeSurfer data out to another stats program. There is all sorts of info on the list about sending FS data out to Matlab, but are there any tips for getting it into a format that SPM will agree with? My other option is t
Hi Shriks,
does this happen on all your subjects? Does it happen on other
(non-inflated) surfaces? On both hemis of the same subject?
Bruce
On Wed, 27 Feb
2008, SHRIKANTH KULASHEKHAR wrote:
Hi,
When I try loading curvature files on to inflated brains of the same subject,
Freesurfer close
Hi Marlisa,
Nick found a bug that may or may not be causing this. Hopefully we'll
have a new stable release shortly.
cheers,
Bruce
On Fri, 22 Feb 2008, Marlisa Isom wrote:
Hello All,
To begin I'm running 4.0.1 on Mac OSX Tiger (Intel).
I'm having trouble with one subject in particular fail
I see that group.levels has four levels. Unfortunately, right now qdec
only supports two levels for a discrete factor. One the features in the
works is to increase this.
On Wed, 2008-02-27 at 14:04 -0500, Cameron B. Ellis wrote:
> Hi,
> I pasted an error that I am receiving in qdec below. SUBJE
Hi,
I pasted an error that I am receiving in qdec below. SUBJECTS_DIR is
/space/lightning/2/users/NEAA-freesurfer. If you need any more information
from me I will be happy to provide it. Any help is much appreciated.
Thanks,
troy:cameo[87] ERROR: QdecGlmDesign::GenerateContrasts: factor 1 mus
Its possible that the alignment must be performed manually, at the very
least confirmed. Use tkregister2 to do this:
tkregister2 --s -fstal
More instructions are here:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach
Nick
On Wed, 2008-02-27 at 20:19 +1100, wanlin wrote:
> -
>
For qdec, there is a tutorial you can follow here:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QdecGroupAnalysis
You will have to create your own qdec.table.dat file containing the
subjects in your group, and any information you want to regress against
(such as age, gender, diagnosis).
Hi,
When I try loading curvature files on to inflated brains of the same subject,
Freesurfer closes abruptly with the following error.
% alloc: invalid block: 0xaec980: 0 0 68
Abort
I am using Freesufer version stable4 on an Linux workstaion running on an AMD64
version of Debian 4.0, with kern
-
Hi,
we met some errors as below when we run "recon-all -subjid SUBNAME
-autorecon1". Similar questions have been asked in
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg06452.html
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg06739.html
But the answer seems not
