[Freesurfer] tksurfer not working

2008-05-30 Thread Dr. Glenn Lawyer
Hi, In my first post on this I said Matlab was not installed on my machine. I was wrong; matlab had been installed. +glenn ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Autorecon1 and combining data from different sessions

2008-05-30 Thread Damian Jenkins
I have two sets of images, one collected at timepoint 1 and one at timepoint 2, for each patient and control in an MS study. I am now trying to run autorecon1 on this data, at the same time attempting to form a combined model fit. I am using the following script: for subject in ***; do

Re: [Freesurfer] sub-voxel projections

2008-05-30 Thread Ben Kennedy
Thanks Doug, everything is working out now. Ben On May 29, 2008, at 5:25 PM, Doug Greve wrote: it's not a Label Value File, it's just a Label (further down the menu list). Benjamin B Kennedy wrote: Sorry, I forgot to add the --paint line. Here's what I've got. I have a label file

[Freesurfer] tksurfer display broken: fixed

2008-05-30 Thread Juranek, Jenifer
Not exactly sure how or what happened...but did manage to fix my tksurfer display problem. Since others on the list had reported similar problems, I thought I'd post what I did to fix the problem. Since I'm not a Linux guru, my fix is probably just a bandaid...but it did work...and hopefully

Re: [Freesurfer] tksurfer display broken: fixed

2008-05-30 Thread Nick Schmansky
Jenifer, Thanks for the detailed info! Just to be clear, does your current /etc/X11/xorg.conf have the line: Load glx glx is OpenGL on X-Windows, allowing X windows apps, like tksurfer, to run using OpenGL, for accelerated graphics. Ideally, you want to load glx. Nick On Fri,

RE: [Freesurfer] tksurfer display broken: fixed

2008-05-30 Thread Nick Schmansky
Jenifer, I see you have this in your /etc/X11/xorg.conf file: Section Module Load glx EndSection Others having the recent tksurfer problem should make sure they have these lines as well, as tksurfer uses glx. Also, fyi, you can get a higher display resolution than the default. Try

RE: [Freesurfer] tksurfer display broken: fixed

2008-05-30 Thread Paul Raines
I also find it curious you are using 16 bit depth instead of 24. On Fri, 30 May 2008, Nick Schmansky wrote: Jenifer, I see you have this in your /etc/X11/xorg.conf file: Section Module Load glx EndSection Others having the recent tksurfer problem should make sure they have these