Can you verify that the file is the right size?
Ian Malone wrote:
Hi,
I'm finding that mri_convert produces a read error when trying to
convert some short analyze files to mgz, invoked as the following:
mri_convert -it analyze -i `pwd`/reslice/00125-003-1.img -o
reslice/mni.mgz
The output
Hello,
I've run into a problem when trying to view surfaces. tkmedit works fine but
tksurfer gives an error saying "Window type not found". I see that others
have had this problem in the past but the solution didn't work, i.e.
setenv doublebufferflag 1
tksurfer ...
Also see:
http://www.mail-arc
Hi Ian,
do you have a .hdr file for both of them? A .mat?
cheers,
Bruce
On Wed, 14 Jan 2009, Ian
Malone wrote:
Hi,
I'm finding that mri_convert produces a read error when trying to convert
some short analyze files to mgz, invoked as the following:
mri_convert -it analyze -i `pwd`/reslice/
Hi,
I'm finding that mri_convert produces a read error when trying to
convert some short analyze files to mgz, invoked as the following:
mri_convert -it analyze -i `pwd`/reslice/00125-003-1.img -o reslice/mni.mgz
The output contains (the dimensions shown are correct):
ERROR: premature end of f
Hello, Dr. Greve,
I followed the steps in the tkregister2 --help: converted both example_func and
orig.mgz to .img of ANALYZE format and ran the tkregister2 use -- fsl
example_func2highres.mat of fsl/FEAT. The two brains are in the different views
(i.e., axial view of example_func overlay on the
Hi Kelly,
the average subject is generated by using the spherical transform to
compute vertex correspondence, then each vertex is assigned the average
tal coordinate of those vertices.
cheers,
Bruce
On Wed, 14 Jan 2009, Kelly Silva wrote:
Hi,
When the average subject is built, is it use
Hi,
I'm trying to use mri_label2voxel to produce an image of a segmented
region in the original image voxel space and am seeing black lines
through the output region, these are oriented parallel to the voxel
axes. In the attached image you can see three of them: two parallel
horizontal lines
You do not need to manually separate the cerebellum from the cortex if the
pial surface is accurately following the cortex (as it's doing in the
pictures you sent). In fact, deleting too much cerebellum might cause
other problems. Do you have any other reason why you want to separate
them?
All
Hi,
When the average subject is built, is it used for the analyses or only to
visualize? I want to understand how freesurfer makes the average subject.
Thanks, Kelly
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