Re: [Freesurfer] Freesurfer 4.0.5 Leopard

2009-01-24 Thread Ming Hsu
Hi Nick, I was able to download 4.0.5, and everything runs fine on the desktop. However over ssh, qdec seems to crash the x server. The program would begin loading, and it appears for a second then the error: X connection to localhost:10.0 broken (explicit kill or server shutdown). Af

Re: [Freesurfer] cropping of average T1

2009-01-24 Thread Bruce Fischl
Hi Sid, put one of them on our ftp site along with the tal xform file. cheers, Bruce On Sat, 24 Jan 2009, Siddharth Srivastava wrote: Hi bruce, This happens for every orig.mgz that passes through mri_convert at the start of make_average_volumes. The files are 9M each, is there

Re: [Freesurfer] cropping of average T1

2009-01-24 Thread Siddharth Srivastava
Hi bruce, This happens for every orig.mgz that passes through mri_convert at the start of make_average_volumes. The files are 9M each, is there a drop-area where i can upload them? I just made some checks: my orig/001.mgz files are LPS (primary->axial), while the converted files are L

Re: [Freesurfer] cropping of average T1

2009-01-24 Thread Siddharth Srivastava
Hi everyone, Has anyone faced this problem before? Is there an alternative to mri_convert than i can try to get the transformation, and then run the subsequent steps? Why are k_ras components approaching zero, and not exactly zero. make_average_surface works fine, no clipping, i