You are not doing it right.
That script is to be run inside a script.
Create a file try.sh
paste that lines in try.sh
Execute chmod +x try.sh
Run ./try.sh
good luck
PPJ
Sent from my Nokia phone @E71
-Msg original-
De: marina.lo...@crccorp.es
Enviada: 27/04/2009 06:00:30
Assunto: Re:
Hi Nick and Pedro Paulo, Thanks a lot for your help and explanations. I have tried to do what you told me but still find only one asc file. I am copying to you what I did, just in case you could detect my mistake:mar...@linux4:~/FS$ export SUBJECTS_DIR=/data/User/marina/FS Where my subjects data fo
Hi,
I created a triangular mesh of a marmoset cortex (layer 4) from histological
slices. Although the marmoset cortex is almost flat, it does have a very deep
calcarine sulcus and I need to push it out. I am hoping that it is possible to
feed the mesh to FreeSurfer so that it can be flattened.
Hi everyone,
Id like to compare the individual cortical thickness results of Freesurfer
with the results of another software. The other software measures the
cortical thickness for example across the whole left parietal lobe. So I
have to get the according value of the whole left parietal lobe
Hi,
I'm trying to run mri_convert to convert CT dicoms into nifti format but
I keep getting the following error:
[multnomah:CT] (nmr-std-env) mri_convert -i
1.2.840.10008.5.1.4.1.22342498128.100.dcm -o ct.nii
mri_convert -i 1.2.840.10008.5.1.4.1.22342498128.100.dcm -o ct.nii
file not found or
Hello,
How can I convert one file *.label into *.img?
Thanks in advance.
Best regards, Kelly
Veja quais são os assuntos do momento no Yahoo! +Buscados
http://br.maisbuscados.yahoo.com___
Freesurfer mailing
Hi Kelly,
I think you can use mri_label2vol.
Try 'mri_label2vol --help' for more options.
Sita.
On Mon, 27 Apr 2009, Kelly Silva wrote:
Hello,
How can I convert one file *.label into *.img?
Thanks in advance.
Best regards, Kelly
Veja quais sã
Hello,
Is there a way to get white matter volumes of gyrus and sulcus in Destrieux
atlas? I tried to use the same method used by white matter parcellation for
Desikan-Killiany atlas, but no wm volumes were reported. Or we get the total
volume of the label (how?), then subtract the gray volume to
Hi, finally I succeded. I changed `seq 1 $numsubject` for `seq 0 52` and it worked properly! So, for some reason, numsubject that was previously defined as = 53, was not working the second issue was that my list started with 0 and thus, ended with 52 (instead of 1 to 53)Thanks for your help again!
mri_label2vol should do the trick
On Mon, 27 Apr 2009, Kelly Silva wrote:
Hello,
How can I convert one file *.label into *.img?
Thanks in advance.
Best regards, Kelly
Veja quais são os assuntos do momento no Yahoo! +Buscados
http://br.maisbuscados
Sorry, I found the error in my script. The ctxseg option cannot be used
here, and we should use a2005s option for mri_aparc2aseg command.
Wayne
On 27/04/09 10:25 AM, "Wayne Su" wrote:
> Hello,
>
> Is there a way to get white matter volumes of gyrus and sulcus in Destrieux
> atlas? I tried
Hi,
While going through the annotation of the clusters, we noticed that the
regions that the cluster summary prints out do not correspond to the actual
location in the brain. For example, in the summary one of the clusters is
reported to be in the isthmus of cingulate. However, when I look at the
Devdutta,
I've confirmed that in our tutorial data, the cluster annotations do
correspond to their proper locations, so I can't say I've seen the
problem you are seeing.
Can you send me your .annot and .cluster.summary files? Send to:
https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Rodrigo,
These appear to be from a NeuroLogica CereTom scanner, and while they
appear to be in dicom format, I cannot get mri_convert to recognize
them. However, mricro does read them, and can convert them to analyze
(which mri_convert can convert to .nii). Converting to analyze loses
orientatio
Hello,
I think my message got scrubbed from my last post with the pictures.
I ran mris_preproc on 56 subjects and then graphed the
concatenated image. I also read this image into matlab and did the
averaging using matlab, and then graphed the resulting image. When I
did this, the two averag
Falk,
If you have the .annot file for a subject, you can break that apart into
individual label files using mris_annot2label. Then knowing which
labels compose the parietal lobe (for the Desikan-Killiany atlas,
superior and inferior parietal, supramarginal, precuneus and postcentral
compose the p
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