Dear Freesurfer users and authors,
Is it possible to export a surface (eg. ?h.thickness) to an image volume -
something which could be read into SPM?
I came across mri_surf2vol function, however I am not to familiar with the
usage. I understand that a volume registration file is required, wha
Dear Freesurfer experts,
I'm trying to convert the annotation file into (binary Analyze file),
I tried the command mri_label2vol and it seems to worked fine,
but I find out that the output file is in 32bit/vox resolution, and
the program
I want to use to open the file doesn't support that and
Aha! Ok.
Scuba seems to be working on another intel mac we have that is running
tiger and fs 4.0.1, do you think it's worth installing 4.0.1 leopard
build, knowing that we won't get any support for it? Or is it likely that
I'll run into the same error?
Thanks!
Akram.
> Akram,
>
> Sorry, I forgot
Hi Nick,
Is the binary called Freeview? I have
freesurfer-Darwin-leopard-i686-stable-pub-v4.3.1 and can't seem to find any
binary starting with fr*.
Cheers,
Satra
On Wed, Jun 10, 2009 at 4:14 PM, Nick Schmansky
wrote:
> its included in the distribution.
>
> On Wed, 2009-06-10 at 15:48 -0400, S
We have managed to get an experimental build of mac working but it's
very unstable. We'll include in the distribution if we see improvement
in the stability with respect to VTK and wxWidgets Mac libraries ( and
their interoperability ) which freeview depends on. However, it runs
nicely on C
I'm not sure Scuba is in active development.
---
Pedro Paulo de M. Oliveira Junior
Diretor de Operações
Netfilter & SpeedComm Telecom
--- Novo Netfilter 3.0 www.Netfilter.com.br
2009/6/10 akram
> Hello,
> I remember I had this same issue
Akram,
Sorry, I forgot freeview doesnt yet run on the mac because of problems
getting the wxWidgets library which underlies it to build and run
correctly on the mac. Its runs on Linux.
Nick
On Wed, 2009-06-10 at 16:14 -0400, ak...@nmr.mgh.harvard.edu wrote:
> Hi Nick,
> freeview is not working.
its included in the distribution.
On Wed, 2009-06-10 at 15:48 -0400, Satrajit Ghosh wrote:
> Hi Nick,
>
> I hadn't heard of freeview. Is there a place we can download it?
>
> Cheers,
>
> Satra
>
> On Wed, Jun 10, 2009 at 3:34 PM, Nick Schmansky
> wrote:
> Will Freeview work for you?
Hi Nick,
freeview is not working. It doesn't seem like there is a
$FREESURFER_HOME/bin/freeview
I remember there was some talk almost a year ago about packing a version
of freeview for mac which Brad started, but I don't remember hearing of
any further progress.
Thanks for looking into this!
Akram
I doubt it as tkmedit/tksurfer have a lot of stuff in them
Nick Schmansky wrote:
Will Freeview work for you? Support for scuba has ended because work on
Freeview to replace has been ongoing.
Nick
On Wed, 2009-06-10 at 15:24 -0400, ak...@nmr.mgh.harvard.edu wrote:
Hello,
I remember I had
Will Freeview work for you? Support for scuba has ended because work on
Freeview to replace has been ongoing.
Nick
On Wed, 2009-06-10 at 15:24 -0400, ak...@nmr.mgh.harvard.edu wrote:
> Hello,
> I remember I had this same issue last summer, and I can't find a record of
> the solution.
> I install
Hello,
I remember I had this same issue last summer, and I can't find a record of
the solution.
I installed freesurfer-Darwin-leopard-i686-stable-pub-v4.3.1 on a MacBook
running Mac OS X 10.5.7 with specs: 2.4 GHz Intel Core 2 Duo, 2 GB 667 MHz
DDR2 SDRAM.
I set my FREESURFER_HOME to /Applications
I am trying to run rebuild_gca_atlas to create an atlas from my segmented
vervet sample. I'm pretty sure I've got everything set up correctly, but am
getting an error:
ERROR: mri_ca_train: talairach.xfm not found in seg_edited.mgz
I'm using vervet (primte) MRIs, so I didn't think a talaira
Hi Karl,
After the white matter edits, you can run
recon-all -autorecon2-wm -autorecon3 -s
The old files will be overwritten.
Please refer to this wiki for more information on recon-all
http://surfer.nmr.mgh.harvard.edu/fswiki/recon-all
Sita.
On Thu, 11 Jun 2009, karlkarl wrote:
Hel
Hello, experts:
I have finished autorecon1-3 on the data. But now when I am examining the data,
some images need skull stripping and white matter editing. So I need to rerun
the steps.
If I strip the skull after autoreon1 and want to put it to autorecon2,
This should be: recon-all �Cs -autor
your 2nd column is all 0s, which probably means you are missing one of
the diagnosis-gender combinations
Toh Hock Wong wrote:
On 10/06/2009, at 9:51 PM, Toh Hock Wong wrote:
Hi all,
I have reconstructed 12 paediatric subjects aged 4-13 and managed
to load qdec as well as generating stats.
On 10/06/2009, at 9:51 PM, Toh Hock Wong wrote:
Hi all,
I have reconstructed 12 paediatric subjects aged 4-13 and managed
to load qdec as well as generating stats. The factors are age,
diagnosis, gender and a continuos factor such as lh temporalpole
thickness. When i click analyze, the
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