[Freesurfer] Order of structures in aparcstats2table

2010-01-04 Thread Dankner, Nathan (NIH/NIMH) [F]
Hi All, I just started using version 4.5, and when I use aparcstats2table to create a table the structures are being listed in a strange order. The ?h.aparc.stats file itself has them in the order in which they were in previous versions (essentially alphabetical except for frontal pole), but f

Re: [Freesurfer] Help in cortical segmentation

2010-01-04 Thread Bruce Fischl
Hi Gerg, the cortical volumes etc. should be reported in the stats file directory, or you can use mris_anatomical_stats directly for whole brain, or with -l or -a file. cheers, Bruce On Mon, 4 Jan 2010, Gergely Orsi wrote: > Dear All, > > First of all, Happy New Year to you All! > > > I'd li

[Freesurfer] Help in cortical segmentation

2010-01-04 Thread Gergely Orsi
Dear All, First of all, Happy New Year to you All! I'd like ask your help in one thing. We're doing morphometric analysis on 100+ subjects. I can get the subcortical volumes easily but I don't know how to get volume information of cortical structures. I saw in some slides that freesurfer makes

Re: [Freesurfer] Retinotopic mapping of only polar data

2010-01-04 Thread f.le...@donders.ru.nl
Hi everyone, I fixed it with the help of Jascha: when using the full path, e.g. /home/frank/etc.../007/f.nii it does find them. So it is now running. Thanks for the help! kind regards, Frank - Original Message - From: "Douglas N Greve" To: "Frank Leoné" Cc: fre