Hi Diandra,
can you send us one of these datasets so we can see if we can track it
down?
thanks
Bruce
On Wed, 21 Jul 2010, Diandra Lucia wrote:
> Hi again,
>
> As we process more cases, we've run into four cases that have had the
> same problem. Each has segfaulted during mri_segment during
>
Hi,
I can create a label file from either ?h.aparc.annot (using
mri_annotation2label) or aparc+aseg.mgz (using mri_cor2label). However, I
find the two same label are shown different using tksurfer. Specifically,
the label created by mri_annotation2label display compact and clear, whereas
one obtai
Yes, you are correct! I found and fixed a bug in the instructions of
that page. Please try again.
doug
Mario Ortega wrote:
> Hi,
> I am a freesurfer user at Washington University.
> I am attempting to return aseg+aparc into native space to implement
> the images into another pipeline.
> My nati
Hi again,
As we process more cases, we've run into four cases that have had the
same problem. Each has segfaulted during mri_segment during
autorecon2; here is one example:
#...@# Mask BFS Mon Jul 19 23:38:35 EDT 2010
/home/pnlstaff/freesurfer/subjects/case2403/mri
mri_mask -T 5 brain.mgz brai
Hi,
I am a freesurfer user at Washington University.
I am attempting to return aseg+aparc into native space to implement the
images into another pipeline.
My native space is 256x256x176 1mm^3 voxels.
mri_label2vol does not accomplish this to the raw_avg or the 001.mgz in the
subjects orig directory
This is not possible with QDEC, but you can use an FSGD file to do it
(or set up your own design matrix). Do a search on our wiki for FSGD to
see examples.
doug
Jeff Sadino wrote:
> Hello,
>
> I would like to be able to do 3-way anova in qdec, freesurfer version
> 4.3.1 and measure the cortica
Hi,
I have a question about the "weighted random effects" option in the "mri_glmfit"
command. Are there any specific references (papers or books etc.) for that
approach, i.e., using contrast variance images to weigh the contrast images in
a second-level analysis. Also, would it be possible for me
Dear experts, we run this command in a file of MRI 3D .nii :
recon-all -force -all -notal-check -i /my_directory_input/my_file.nii
-subjid my_directory_output
and i get the attached image of output for a single time point, after 40
hours of elaboration.
We don't understand why there isn't the
