Re: [Freesurfer] CUDA vs. ATI Stream / OpenCL

Hi Nick, We are planning to buy a GTX 460 1G card because of the cuda support of Freesurfer. It seems the most reasonable buy for CUDA device, 336 Core, 1350MHZ shader, and around 100 $ cheaper than the 285GTX. Does this card has double precision support? And what is you guess (time) about the

[Freesurfer] Notes on CUDA Acceleration

Greetings, I've been asked to provide some extra information about GPU support in Freesurfer (being the one guilty of mri_em_register_cuda...). Firstly, there are no immediate plans for OpenCL support. It would be very nice to have - with ATI, NVIDIA _and_ x86 multicore backends. However, it's

[Freesurfer] CUDA error...

Hi: I installed the latest NVIDIA driver (256.44) in my DELL Precision T3500 (Quadro FX-580 graphic board, Ubuntu 9.04)... Then I installed CUDA Toolit 3.1 (for Ubuntu 9.10)... Then, I restart my computer... I tried to process a study with the freesurfer command: recon-all -autorecon1 -s

Re: [Freesurfer] Notes on CUDA Acceleration

since we'll be providing updates to these _cuda binaries (in the form of the fscudabins_linuc_centos4*.tgz tarballs), i'll make sure they are built with the 1.1 architecture in our stable branch. i'm thinking our plan will be to conform to the 1.1 architecture for the near term stable release

Re: [Freesurfer] CUDA error...

no sure about that error, but clearly we need to look at that devicemanagement.cu code as it seems to be the gate keeper to getting anything running. we'll see if we can get that code to produce some useful error message and post a new _cuda tarball. n. On Tue, 2010-08-24 at 11:48 -0400,

Re: [Freesurfer] how to expand the disk size if I use VirtualBoxFS45

Hi, there, Thanks a lot for your help, now I have attached the new vdi to the old vid, but I still can not access the new space after I restart the old vdi. I searched online, it looks like I'd use some software to clone the old vdi to the new vdi, then set the new vdi as the primary master,

[Freesurfer] How to add volume on pial surface in manual editting the trouble shootings

Dear freesurferers I have faced a problem in editing pial surface in trouble shootings. Since the page https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/PialEdits has showed how to delete volume which is really useful, however, we faced another problem, that is how to add volume. I selected the

Re: [Freesurfer] How to add volume on pial surface in manual editting the trouble shootings

we don't actually have a way to edit the pial surface. Usually, the problem you describe is an intensity normalization problem, so you might want to put some control points near the place where the pial surface is in error. Be careful putting in the control points. You want to make sure that

[Freesurfer] tkmedit and intensity normalisation

Dear FreeSurfer experts, I have two question for you please, First, I started recently to get the following message when I try to load the tkmedit GLUT: Fatal Error in tkmedit.bin: OpenGL GLX extension not supported by display: IP address And sometimes tkmedit.bin: xcb_io.c:452: _XRead:

Re: [Freesurfer] tkmedit and intensity normalisation

I don't know about the 1st question, but on the 2nd question, you do not have to rerun recon-all twice if you fix both of them at the same time. doug Ali Radaideh wrote: Dear FreeSurfer experts, I have two question for you please, First, I started recently to get the following message

[Freesurfer] ftp server down??

Hi! I cannot download anything from ftp://surfer.nmr.mgh.harvard.edu/pub. Is it down? Gen ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is

Re: [Freesurfer] How to add volume on pial surface in manual editting the trouble shootings

Hi Jin you have to identify the problem. Is it that the white matter surface is incorrect so the pial doesn't get out far enough? Are the intensites in the wm and gm darker in that region? Is there a gm leson? If you upload the dataset we'll take a look cheers Bruce On Tue, 24 Aug 2010,

Re: [Freesurfer] ftp server down??

Hi Gen, yes, we've had some local hardware issues. Is it up now? cheers Bruce On Tue, 24 Aug 2010, Gennan Chen wrote: Hi! I cannot download anything from ftp://surfer.nmr.mgh.harvard.edu/pub. Is it down? Gen ___ Freesurfer mailing list

Re: [Freesurfer] ftp server down??

No. Still down. Gen On Tue, Aug 24, 2010 at 6:30 PM, Bruce Fischl fis...@nmr.mgh.harvard.edu wrote: Hi Gen, yes, we've had some local hardware issues. Is it up now? cheers Bruce On Tue, 24 Aug 2010, Gennan Chen wrote: Hi! I cannot download anything from

Re: [Freesurfer] ftp server down??

Try back in 24 hours. Our storage servers are down right now On Tue, 24 Aug 2010, Gennan Chen wrote: No. Still down. Gen On Tue, Aug 24, 2010 at 6:30 PM, Bruce Fischl fis...@nmr.mgh.harvard.edu wrote: Hi Gen, yes, we've had some local hardware issues. Is it up now? cheers Bruce

Re: [Freesurfer] ftp server down??

Will do. Gen On Tue, Aug 24, 2010 at 8:10 PM, Paul Raines rai...@nmr.mgh.harvard.edu wrote: Try back in 24 hours.  Our storage servers are down right now On Tue, 24 Aug 2010, Gennan Chen wrote: No. Still down. Gen On Tue, Aug 24, 2010 at 6:30 PM, Bruce Fischl