Hi Mira,
If the map you provided is of uncorrected p-values at say p=0.05, then
you appear to have just a couple small regions of group differences, so
it isn't surprising that after FDR nothing would survive.
The result is what it is, and unless you had specific a priori
hypotheses regarding re
Hi,
I have a dataset that seems to have some very nice group differences (please
see the graph and qdec image), but they never seem to survive FDR. I noticed
when I run the "Set Using FDR", it generates a very high threshold above 5;
where as, with some of my other datasets FDR is set much lo
use mri_binarize to set each brain voxel value to the same value (maybe
bet does this), then use something like:
mri_tesselate mybrainmask.nii.gz 127 mybrainmask.surf
where '127' happens to be voxel value used in the binarization.
n.
On Fri, 2010-10-22 at 15:08 -0600, Alexander Hunold wrote:
>
Dear experts,
I got BEM surfaces out of the BET tool from the FSL package. The surface
files are in nifti format (*.nii.gz).
Now I wonder if there is any opportunity to convert nifti surfaces to
FreeSurfer surface in surf format (*.surf)?
I appreciate any hint.
Thank you so much in advance.
the subject 'fsaverage', included in the subjects dir of the
distribution, is already registered to talairach space, and it contains
the desikan annotations, so you could get the coords from that. you'd
have to load it in tksurfer and click on the center vertex of region to
get the coord though, a
Hi all,
We are trying to depict spatial relations of each of the Desikan et.
al (2006) gyral regions in a separate 3-D graph. To do this we need every
regions' center Talairach coordinates in common space, not in relation to any
particular group or subject. Is there a way to do this
Hi,
Is it possible in matlab to get the volume index coordinates
corresponding to specific MNI coordiates?
Thanks,
Yigal
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The infor
it does not work in v5.0. however, this is one of our top priorities to
get working for release in the upcoming 5.1 (within a month or less).
n.
On Fri, 2010-10-22 at 12:42 +0200, Andreas Schindler wrote:
> Dear Freesurfers
>
>
>
> Does anyone know if freeview already works on Mac OS Snow Le
Dear Freesurfers
Does anyone know if freeview already works on Mac OS Snow Leopard or
when it will be patched?
best wishes
Andreas
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