Re: [Freesurfer] how can do ''mri_convert''quickly when there are too many subjects

2011-07-16 Thread Peter J. Molfese
A script is definitely the easiest way to process quite a few subjects. You can save some headache by using a recon-all command with an input for your image files. For example: "recon-all -s sleep_001 -i sleep_001.nii -all" will create a subject folder in the correct location named sleep_001 a

Re: [Freesurfer] Freesurfer Digest, Vol 89, Issue 52

2011-07-16 Thread Jamaan Alghamdi
11/7/15 ??? : > >> ??Hi Bruce, > >> > >> ?In our research,if there are?100 subjects,how?can I ?process these > data > >> easily.For example?when I want to compare their thickness's > difference?at > >> first?I should do > >> &

Re: [Freesurfer] how can do ''mri_convert''quickly when there (applescript)

2011-07-16 Thread Jamaan Alghamdi
> if you have data in directories you would do something line this: > > > > > > #!/bin/tcsh > > > > > > cd /path/to/native/files > > > > > > for x in `ls -dA1 name_pattern_*`; > > > do > > &

Re: [Freesurfer] Re : Book with FreeSurfer chapter

2011-07-16 Thread Pedro Paulo de Magalhães Oliveira Junior
Sorry Andrew. I didn't know. -- iOS 4.3 Em 16/07/2011, às 14:28, "Simmons, Andy" escreveu: There are also several other chapters of the same book using Freesurfer in AD, including Magnetic Resonance Imaging and Magnetic Resonance Spectroscopy for Detection of Early Alzheimer's Disease / Eri