Hi
I used recon-all on two different system one with Ubuntu 11.10 and a
cluster with Centos 5.7. When I compare the recon-all of these two
recon-all run I see that there is a small difference. Is this difference
caused by difference in math libraries, and difference in the way
floating point i
Hi Anastasia,
Here is the data:
https://transfert.inria.fr/fichiers/4531ddb4948dff7223febc5a5b4f7e7d/testData.tar.gzLet
me know if you have any trouble.
I changed to the other track-all, and the error is the same.
Please let me know if I'm doing anything wrong!
Thank you!
Viviana Siless
--
Parieta
On Fri, Apr 6, 2012 at 4:05 AM, Knut J Bjuland wrote:
> I used recon-all on two different system one with Ubuntu 11.10 and a
> cluster with Centos 5.7. When I compare the recon-all of these two
> recon-all run I see that there is a small difference. Is this difference
> caused by difference in ma
Hello--was wondering if you guys have any ideas. I am a bit stumped.
Thanks for the help!
Anthony
On 4/4/12 4:50 PM, Anthony Dick wrote:
> No, but the conversion from the original .nii works...
>
> [miles:[PATH]] adick% mri_convert chuman_1.mgz junk.mgh
> mri_convert chuman_1.mgz junk.mgh
> $Id:
can you upload chuman_1.nii to our file drop?
On 04/06/2012 11:30 AM, Anthony Dick wrote:
> Hello--was wondering if you guys have any ideas. I am a bit stumped.
> Thanks for the help!
>
> Anthony
>
> On 4/4/12 4:50 PM, Anthony Dick wrote:
>> No, but the conversion from the original .nii works...
Does the GUI front-end for mkanalysis-sess still work in version 5? If I try
`mkanalysis-sess -gui`, it starts asking for additional parameters (e.g., -fsd
flag). If I specify all of the additional parameters, it just creates the
analysis without launching a GUI. Am I missing something?
Thanks,
no, sorry, the GUI ended up being too difficult to maintain.
doug
On 04/06/2012 12:27 PM, Greg Burgess wrote:
> Does the GUI front-end for mkanalysis-sess still work in version 5? If I try
> `mkanalysis-sess -gui`, it starts asking for additional parameters (e.g.,
> -fsd flag). If I specify all
if you email me the .mgz I'll fix it.
On Fri, 6 Apr 2012, Anthony Dick
wrote:
> Hello--was wondering if you guys have any ideas. I am a bit stumped.
> Thanks for the help!
>
> Anthony
>
> On 4/4/12 4:50 PM, Anthony Dick wrote:
>> No, but the conversion from the original .nii works...
>>
>> [mile
Hello,
I have been trying to figure out if it is possible to overlay a grid
on a surface (such as the regular non-inflated pial surface). I would
like the grid to ignore the cortical convolutions and follow just the
overall curvature of the cortex.
I am trying to represent a grid of electrodes o
Hi Phiroz,
I'm not sure I understand, but I think what you could do is create a
volume representation of the grid, then sample it onto the surface with
mri_vol2surf
cheers
Bruce
On Fri, 6 Apr 2012, Phiroz Tarapore wrote:
> Hello,
>
> I have been trying to figure out if it is possible to overl
If you don't want it to go into the folds of the sulci, you may want to
use the brain surface from mri_watershed (note you will have to re-run
with --save). This option is probably the simplest and most
straightforward. If you are unhappy with those results there are many
other options, which c
sorry, it should have said -surf -useSRAS options
Bruce Fischl wrote:
> Hi Phiroz,
>
> I'm not sure I understand, but I think what you could do is create a
> volume representation of the grid, then sample it onto the surface with
> mri_vol2surf
>
> cheers
> Bruce
>
> On Fri, 6 Apr 2012, Phiro
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