Hello,
I am attempting to run preproc-sess on my functional data, and am following
the tutorial found here:
http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastTutorialV5.1/FsFastPreProc
I downloaded the tutorial data, and find that when I view
fmcpr.up.sm5.mni305.2mm.nii.gz it looks quite ugly (i.e.
Dear FreeSurfer experts,
I would like to get labels, get them in MNI305 space and to
visualize them on the brain.mgz, which to be in MNI305.
I used following:
a) To get labels in MNI
$FREESURFER_HOME/bin/make_average_subject --out asub1
--subjects sub1
#creat labels
mkdir $SUBJECTS_DIR/sub1/la
We'd like to obtain total cerebellar volumes. There are errors within the
cerebellar segmentation as revealed in the aseg.mgz file. Is there a
method Is there a method to manually edit the cerebellar segmentation?
Thank You,
Rachel Steinhorn
___
Freesu
My lab would like to look at the cerebellar parcellation volumes, but
looking through the aparc+aseg.mgz, we've noticed some areas where the
cerebellar segmentation includes non-cerebellar tissue. Is there any way
to edit the segmentation and recalculate the volumes to exclude the
incorrect voxels
Dear List
I am adding to the post on this error from yesterday regarding problems
with running qcache.
I know this has been posted to the list before, but the suggested fixes and
checks don't fix the problem.
See the error below (ERROR: number of vertices in
/projects/d20277/dek/done/analyzed/33
Hi Darshan,
The ribbon.mgz is created/updated in autorecon3. -autorecon2-wm ends at
the inflate2 step, the last step before autorecon3.
-Louis
On Thu, 20 Sep 2012, Darshan P wrote:
I had a case which did not estimate the white matter clearly . So i used
tkmedit to add the voxels to the wm.
I had a case which did not estimate the white matter clearly . So i used
tkmedit to add the voxels to the wm.mgz.
After running program using autorecon2-wm the new surfaces were created , but
the ribbon.mgz was not .
Shouldn't the ribbon update too , because it shows the thickness of gm.
