Re: [Freesurfer] long_mris_slopes error

2012-10-04 Thread Martin Reuter
You need a newer version of glmfit. This is not the 5.1 I think. Best Martin Alex Hanganu wrote: >Hello Martin, > >thanks for the help, I changed all the scripts from that page, but the >problem still persisted, so one of our colleagues found that the >mri_glmfit from the ReleaseNotes (15.8MB)

Re: [Freesurfer] freesurfer problems

2012-10-04 Thread Douglas N Greve
Did you follow the instructions in the error message? doug On 10/04/2012 04:46 PM, Nucleos P wrote: > I am currently using a Linux Workstation with Redhat. I recently > installed Freesurfer on this computer. It works fine on the other > computers... These are the errors I am getting: (The import

[Freesurfer] freesurfer problems

2012-10-04 Thread Nucleos P
I am currently using a Linux Workstation with Redhat. I recently installed Freesurfer on this computer. It works fine on the other computers... These are the errors I am getting: (The important points are in Bold) proc_fs test_mgi MGI2 #start: /usr/local/freesurfer/bin/proc_fs Thu Oct

Re: [Freesurfer] long_mris_slopes error

2012-10-04 Thread Alex Hanganu
Hello Martin, thanks for the help, I changed all the scripts from that page, but the problem still persisted, so one of our colleagues found that the mri_glmfit from the ReleaseNotes (15.8MB) is for Linux, and we are using mac, so we changed back the mri_glmfit to the old version (6MB), and now

Re: [Freesurfer] mris_pmake options

2012-10-04 Thread Rudolph Pienaar
Hi Octavian -- On Wed Oct 3 17:43:51 2012, octavian lie wrote: > mris_pmake --subject A --hemi rh --surface0 sphere.reg --curv0 sulc > --curv1 sulc --mpmOverlay euclidean --mpmProg pathFind --mpmArgs > startVertex:1,endVertex:2 That seems about right if you want to use the spherical surface. >

[Freesurfer] how to get freeview run on ubunto

2012-10-04 Thread yawu Liu
Hi Freesurfers, I have installed Freesurfer 5.1 in my Ubunto. I run analysis with testing and our won data without problem. But when I run: d4201z-CELSIUS-M470-2:/usr/local/src/freesurfer/subjects/long-tutorial> freeview -v OAS2_0001/mri/norm.mgz, then Error message appears:freeview.bin: error