Re: [Freesurfer] fscalc / mris_calc problem

2013-01-03 Thread Fred Lado
Thank Nick, when I try mris_calc, I get the following error: /Users/Lado 1 mris_calc /usr/local/freesurfer/bin/mris_calc: Exec format error. Binary file not executable. I applied chmod/chown/chgrp to the executable files to resemble the other freesurfer executables, the prior mris_calc file

[Freesurfer] Freesurfer 5.2 release date?

2013-01-03 Thread Mehul Sampat
Hi Folks, I just wanted to inquire about the estimated release date for Freesurfer 5.2 ? Is there a beta version we could try out ? Thanks Mehul ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] fscalc / mris_calc problem

2013-01-03 Thread Rudolph Pienaar
That error typically means you're trying to run a binary file compiled for a different architecture (i.e. running a Linux binary on a Mac or vice versa). You can easily check what 'mris_calc' is compiled for. # On a Mac: $cd $FREESURFER_HOME/bin $file mris_calc mris_calc: Mach-O 64-bit

[Freesurfer] bbregister error: no regisster.dat file

2013-01-03 Thread Shukla,Priyank
Hi, My bbregistration finished with the warnning - WARNING: initial G-W contrast was negative, but expected positive. If the mov data has a T1 contrast, re-run with --T1

Re: [Freesurfer] Freesurfer 5.2 release date?

2013-01-03 Thread Nick Schmansky
Hi, A beta of the upcoming v5.2 is available here: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.2.0-BETA/ the hold-up has been getting the 64b mac lion build working, which has been a challenge, but we're close. I dont anticipate these posted linux builds to change, so barring bugs

Re: [Freesurfer] Freesurfer 5.2 release date?

2013-01-03 Thread Anastasia Yendiki
Note: Nick's response does not apply to tracula code, where changes can be expected until the night before the official release. On Thu, 3 Jan 2013, Nick Schmansky wrote: Hi, A beta of the upcoming v5.2 is available here: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.2.0-BETA/