Hi Jeff, see if this page answers your question
http://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat
doug
On 1/10/13 6:24 PM, Jeff Eriksen wrote:
I have been asked to use FreeSurfer to create a good brain mask for
use in another analysis stream (DTI and other things). I have chosen
t
Does the disk have space on it? It could also be a virtualbox problem,
in which case I'll leave it for others.
doug
On 1/10/13 8:29 PM, ZhiLiangLong wrote:
Hi everyone:
I am using freesurfer 5.1.0 to run my own data to compute
cortical thickness in VirtualBox. When it runs the comman
I have been asked to use FreeSurfer to create a good brain mask for use in
another analysis stream (DTI and other things). I have chosen to do this by
running recon-all on the structural scan, then taking the (aseg+aparc) and
using FSL to dilate and erode to fill holes. This I binarize and rotat
Thank you, Nick. I tried using fixup_mni_paths, but received a poor result.
I copied the stdout below:
***
yocto/j/dti7/Susie/freesurfer/subjects> su
Password:
root@yocto:/j/dti7/Susie/freesurfer/subjects# fixup_mni_paths
fixup_mni_paths: command not found
root@yocto:/j/dti7/Susie/freesurfer/subje
Unfortunately Windows XP SP3 is no longer Tier-1 supported for VirtualBox.
I suggest you to try it on Windows 7 or Windows 8.
cheers
PPJ
-
Pedro Paulo de Magalhães Oliveira Junior
Netfilter & SpeedComm Telecom
-- www.netfilter.
Hi Louis-
I dug a little deeper and examined the rgb files before conversion. The problem
is not with the IM conversion, it is with the capture. For example,
'_curv_lh_lat.rgb' is just fine, but from the same subject
'snapshot-talairach-H-128.rgb' is garbage.
Any ideas on this?
Thanks,
Wil
-
Hi Catherine
can you clarify? Are you getting them properly segmented in the aseg? Is
this a disease population? There are a bunch of things going on in the
images you sent, although it's hard to be sure from a single slice. It
looks like your bandwidth is low enough that you are getting a lot
Hi I add the same problem; It finally worked :
- using libreoffice instead of excel to transpose the bvec/bval files ;
- with english as linguisitic parameter,
- save the file as cvs document, with the filter parameters box checked
- in the filer option choose "space" as field separator; " as tex
