Hi Laura,
I think yes, sounds right. Maybe run both ways and see if the results agree
or differ.
All the best,
Anderson
2013/3/9 Laura M. Tully
> Hi Anderson,
>
> Thanks, that reference is particularly helpful.
>
> Re: the usage of the white versus pial area question - I believe that the
> defa
Hi Anderson,
Thanks, that reference is particularly helpful.
Re: the usage of the white versus pial area question - I believe that the
default area calculation in freesurfer is the white surface area, so unless
one specifies the pial in calculations, the standard surface area output
for surface a
Sinead,
Is 'nu_correct' in your freesurfer/mni/bin directory? Are you being
careful to run the setup script for just freeview 5.2 and not other
packages or versions which might mess-up the perl paths?
Nick
On Fri, 2013-03-08 at 09:50 +, Sinead Kelly wrote:
> Dear all,
>
>
> I am currentl
Marcos,
Does mri_convert work? What version of tcsh was installed? Maybe you
can try the freesurfer centos4_x86_64 distribution? We havent tested on
Fedora 18 so we havent seen this before.
Nick
On Sat, 2013-03-09 at 16:11 -0300, Marcos Martins da Silva wrote:
> I did and got the following t
Hi Laura,
>1. Is there a paper that I could cite that recommends using mean
>cortical thickness rather than ICV?
>
>
If it helps, we used cortical thickness and area as covariate for the
respective analysis of regional thickness and area. Brain volume, which is
more closely related to ICV
I did and got the following to test freesurfer installation according to
freesurfer website directions:
[marcos@alien ~]$ tkmedit bert orig.mgz
===
ERROR: A segfault has occurred. This is not your fault,
: but is most likely an unrecoverable error and has
: mad
Hello freesurfers,
It appears that prior discussions on the listserv have recommended using
mean cortical thickness (rather than ICV) as a covariate for thickness
analyses (predominantly recommended by Michael Harms). I have three
questions about this:
1. Is there a paper that I could cite th
