Re: [Freesurfer] TRACULA - tract volume and length

2013-06-22 Thread Anastasia Yendiki
Hi Fred - As with any probabilistic method, "volume" here is a measure of the spread of the probability distribution of the pathway (i.e. of path.pd.nii.gz), so it can be interpreted as the amount of uncertainty in the data. A more spread out distribution means more uncertainty, a tighter dis

Re: [Freesurfer] Possible to generate connectivity map using FS and Tracula

2013-06-22 Thread Anastasia Yendiki
Hi Sal - Not sure what you mean by connectivity maps, can you be more specific? Tracula is not a method for exploratory analyses of the type "what is my seed region connected to?" It's a method for reconstructing a set of 18 major white-matter pathways, which are listed here: http://www.fronti

[Freesurfer] ribbon label volume mapping

2013-06-22 Thread Colin Reveley
If one has a volume of integers, each representing a cortical area, can one map that to the surface as a set of labels, in a smart way that e.g. takes the mode of the voxels that lie on the vector between equivalent white and pial nodes (ie uses curvature and thickness information, tacitly or expli