Re: [Freesurfer] kvlQuantifyHippocampalSubfieldSegmentations Usage

2013-12-24 Thread Koen Van Leemput
Hi Salil, You're right: the conversion factor to mm^3 is 1/8, since every voxel is 0.5mm isotropic. The partial volume modeling code is there but not thoroughly tested. Using it is not recommended. Hope this helps, Koen On Dec 22, 2013 2:10 AM, Salil Soman salso...@stanford.edu wrote: Hi,

[Freesurfer] fsl T2pial

2013-12-24 Thread Octavian Lie
Dear All, I plan starting running the -FLAIRpial flag for pial refinement, after recently upgrading freesurfer to dev (12/19/2013), centos6 86X64 build. I installed the new fs according to the wiki guidelines. I read on the forum that FSL_DIR has to be set up, and FSL has to be installed for