Re: [Freesurfer] Unpacking Problem

2014-06-08 Thread Louis Nicholas Vinke
Hi Emad, In your recon-all command what does 03551671 correspond to? I don't see 03551671 in the scan.info file corresponding to any of the runs. I think you want to use 03557285. Also, run 26 apparently has 176 frames which shouldn't be the case. -Louis On Wed, 4 Jun 2014, Emad Ahmadi wro

Re: [Freesurfer] neocortical gray matter

2014-06-08 Thread Louis Nicholas Vinke
Hi Elisabetta, The cortex measure (surface-based) reported in the aseg.stats file would be best. See this site for details on various morphometry measures: https://surfer.nmr.mgh.harvard.edu/fswiki/MorphometryStats -Louis On Thu, 5 Jun 2014, Elisabetta del Re wrote: > Dear Freesurfer team,wha

[Freesurfer] From NIfTI T1 to its volume cortical thickness map in MNI152 space.

2014-06-08 Thread Fred Sampedro
Dear FreeSurfer experts, I am interested in analyzing group differences in cortical thickness with an application-specific GLM model that is build to work on MNI152 volume data. For that, my plan is to obtain a "cortical thickness volume in MNI152 space" for each of my MRI scans. My input data are

Re: [Freesurfer] freeview permission error

2014-06-08 Thread Bruce Fischl
Hi Derek this means you don't have file system permission to save the control point file where you are trying to. Check the subject directory and see if you have write permission. If not, you will need to talk to your sys admin to get it fixed Bruce On Thu, 5 Jun 2014, Andrews, Derek wrote

[Freesurfer] Method development for coupled EEG-fMRI (2x full EPSRC PhD studentships)

2014-06-08 Thread Etienne B. Roesch
Method development for coupled EEG-fMRI (2x full EPSRC PhD studentships) The goal of the project is to develop novel methods for the joint analysis of signals from electroencephalography (EEG) and functional magnetic resonance imaging (fMRI), when they are obtained concurrently. Technological a