Re: [Freesurfer] skewed CT viewed in tkregister2

Hi, Any insight on this problem I'm having with tkregister2? I haven't been able to resolve this yet. My original posting is below with the output from bugr. Thanks! Mia From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.

Re: [Freesurfer] v5.1 control point mri_ca_normalize bug

correct (the thing to do is comment-out the addition of the control points). n. On Wed, 2014-10-08 at 17:05 -0400, Bruce Fischl wrote: > I don't think you want to run with -nocanorm. Just commenting out the > addition of the -f $ControlPointsFile should be sufficient. Right Nick? > On > Wed, 8

Re: [Freesurfer] cortical surface area measurement and vertex-wise analysis

Hi Donna, In that same paper we also comment on the differences between expansion/contraction and absolute areal measurements assessed at each face of the surface (i.e., facewise), which can, after interpolation, be converted to vertexwise to facilitate analysis using current tools (e.g., mri_glmf

Re: [Freesurfer] cortical surface area measurement and vertex-wise analysis

Hi Emma, Could you clarify what would be the disadvantages that you've heard about? I ask because we've studied and tried to clarify many aspects of the analysis of surface area in this paper . Maybe if there's something not cover

[Freesurfer] no-octave

Dears, Mkanalysis-sess does not accept -per-run and It looks like mkcontrast-sess cannot initiate Matlab in the terminal. I have installed octave and addpath and save path both /home/fsl/Desktop/freesurfer/matlab /home/fsl/Desktop/freesurfer/fsfast/toolbox I will appreciate in advance if