[Freesurfer] Trac-all Image Correction error

2014-12-29 Thread Ashley Hannah
Hello, I keep receiving an error when I try to run 'trac-all -prep -c dmric.trac' The error I receive says that dwi_orig_flip.mghdti.bvecs can not be moved but in the code it is never created. Is there a way to manually create this file? I have tried to manually run the code and edit the dmric

Re: [Freesurfer] Trac-all Image Correction error

2014-12-29 Thread Anastasia Yendiki
Hi Ashley - You need to specify a gradient table and b-value table. You can find more information on how to do this in the tutorial here: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Tracula Hope this helps, a.y On Mon, 29 Dec 2014, Ashley Hannah wrote: Hello, I keep

[Freesurfer] freesurfer with infants

2014-12-29 Thread Alice Graham
Hi all, I've seen several posts in the last few years regarding using freesurfer with infant brains. There was also reference to an ongoing effort to create infant atlases for freesurfer. If anyone has infant specific freesurfer atlases (or tips on using freesurfer with neonates) that they