Hi Martin,
I am a little confused. Can you explain a little more about what you
need? Do you want the freesurfer cortical ROIs dilated into the
surrounding regions like white matter and CSF or something? If so,
then Doug's suggestion sounds reasonable.
In the case of my parcellation, I ran the MN
​Dear free Surfer experts,
I am trying to do surface group analysis of 8 patients (for now) divided
into two groups of SCA1 and SCA2. wgen I run the qdec & command I can get
the summary of the data but when I try to generate stats data table I get
the following error:
[root@localhost qdec]# qdec
can you run mris_info on
/scratch/lfs/aoshea/testAndrew/dotsonFSprocessed//EX03/surf/rh.white
and/or view it in freeview to make sure it isn't corrupted?
On
Wed, 15 Jul 2015, O'Shea,Andrew wrote:
Hello all,
I am having an issue where the mris anatomical stats command is failing and
only prin
Dear Thomas and Doug,
Thanks a lot for your replies, I believe you fully answered my question.
@Thomas: The reason I would like to dilate masks into white matter is that
although the masks are quite accurate for structural volumes, the
functional data doesn't perfectly fit the structural (even wh
Hello all,
I am having an issue where the mris anatomical stats command is failing and
only printing 'segmentation fault' instead of the expected volume, area,
thickness, etc. This is happening for ~20% of the subjects, but seems to work
fine for the remaining 80%. All labels were created and ma
I tried loading the label and surfaces in free view and everything looks
normal to me. This is the output I get with mris info:
[aoshea@gator1 ~]$ mris_info
/scratch/lfs/aoshea/testAndrew/dotsonFSprocessed/EX03/surf/rh.white
SURFACE INFO
type: MRIS_
hmmm, maybe upload the subject and we'll take a look?
On Wed, 15 Jul 2015,
O'Shea,Andrew wrote:
I tried loading the label and surfaces in free view and everything looks
normal to me. This is the output I get with mris info:
[aoshea@gator1 ~]$ mris_info
/scratch/lfs/aoshea/testAndrew/dotsonFSp
SPM does not make any distinction about the source of the data. For SPM to
work, all you need is .nii files for your data and you'd need a VOI.mat
that corresponds to the .nii file size.
If you take a look at the gPPI toolbox on the NITRC website, there are
commands/tools that convert FS-FAST 1st
