Hi Christiane,
You can use mris_info lh.pial-outer-smoothed
Best,
Marie
On Sep 7, 2015, at 10:57 PM, "Jockwitz, Christiane"
mailto:c.jockw...@fz-juelich.de>>
wrote:
Dear all,
I would like to extract the surface area from the outer smoothed hull of a
particular region of interest that is
Dear all,
I would like to extract the surface area from the outer smoothed hull of a
particular region of interest that is created during the local gyrification
process. Using mri_segstats I got the error message: couldn't determine type of
file lh.pial-outer-smoothed
Is there any other way to
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Those labels are for gray matter structures
Cheers
Bruce
> On Sep 7, 2015, at 6:48 PM, John Anderson wrote:
>
> Hi Doug,
> Thank you for your response.
> When we open "wmparc.mgz" in freeview we can see clearly that we have labels
> for cortical parcellations and it is white matter parcella
Dear All,
In your entry on corical parcellation:
https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation
You enumerate a certain list of cortical labels obtained in that procedure. If
I run aparcstats2table I got the measures for exactly these labels.
However, when I run mri_annotation2
Hi Doug,
Thank you for your response.
When we open "wmparc.mgz" in freeview we can see clearly that we have labels for cortical parcellations and it is white matter parcellations as well as the unsegmented white matter
What is really confusing me is that deep structures like the thalamus, amygd
The best thing is to take a look at the wmparc. It was not really
designed to be deep and superficial. There is only one "deep" WM seg
which is called "Unsgemented White Matter" or something like that.
doug
On 9/5/15 5:54 PM, Bruce Fischl wrote:
Hi John
I defer to Doug. Not sure he ever publ
>
>
> Hi All,
>
>
> I have some basic questions regarding of layers surface in freesurfer. The
> main idea is to extract the time series between different layers.
>
> 1 After recon -all, I got white surface and pial surface, then I use
> mri_expand to get 3 additional layers’ surface betwe
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