Re: [Freesurfer] Error on Linux

2016-01-30 Thread Zoltick, Brad (NIH/NIMH) [E]
Hello Ankita and Markus, Under Ubuntu 14.04 LTS, there is already a package that provides this shared library libjpeg.so.62 sudo apt-get install libjpeg62 __ dpkg -L libjpeg62 /. /usr /usr/lib /usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/libjpeg.so.62.0.0 /usr/share

Re: [Freesurfer] Error on Linux

2016-01-30 Thread Markus Gschwind
HI, Please see the solution for this known error below, as given in this list form Zeke some months ago: Good luck, Markus 2015-09-22 6:05 GMT+02:00 : > Hello, > > This is a known when running freesurfer on Ubuntu systems. The solution is > addressed in the FAQ section on the frresurfer download

[Freesurfer] matrix is ill-conditioned or badly scaled, condno = 27492.1

2016-01-30 Thread Nabin Koirala
Dear Freesurfer forum, 'I am trying to run qdec analysis for a group of subjects to see if correlation exists but I am getting this error only for this particular set of data but could not figure out what is exactly wrong with it. Your suggestion would be greatly appreciated. Following is the te

Re: [Freesurfer] Error on Linux

2016-01-30 Thread Ankita Chatterjee
Hello, I am hoping some freesurfer experts can help - I can't seem to be able to run qdec or freeview as I get an error - "error while loading shared libraries: libjpeg.so.62: cannot open shared object file: No such file or directory". I did run the command that probably links that library, but no

Re: [Freesurfer] Longitudinal analysis--mass univariate {Disarmed}

2016-01-30 Thread Martin Reuter
Hi John, What I mean is there could be a bias in your study design if 99% of group 1 have three or more time points and 99% of group 2 have only two time points. This is something you should check. If distributions are approximately similar, you’d be fine. LME can be used in either case. If t

[Freesurfer] MATLAB command not found fast_selxavg3

2016-01-30 Thread m.abouelyazid
While I fix the virtual machine issues, I tried to use freesurfer on a cluster machine which has matlab and FSL. Problem is, when I executed fast_selxavg3 preprocessing is done but when matlab gets started it gives me a message of matlab command not found. When I type matlab in the terminal it

Re: [Freesurfer] fast_selxavg3 error when Octave is used

2016-01-30 Thread m.abouelyazid
After installing the io package textread works. Sent from Mail for Windows 10 From: Douglas N Greve Sent: Saturday, January 30, 2016 2:06 AM To: m.abouelya...@gmail.com; Freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] fast_selxavg3 error when Octave is used Does octave now have a versi