At the Research Group for Lifespan Changes in Brain and Cognition, University
of Oslo, Norway, we have an available position in neuroimaging for an excellent
candidate, who will work with several projects on life-span development and
aging, dementia and biomedical risk factors using different
Dear Doug,
I'm getting mri_segstats error [mghread(...ribbon.mgz) at the end of
-autorecon2.
I saw your answer for others about this Q before and i know how to solve this
IF i was able to access to the links you posted.
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats.
Sure. I'm uploading now. The above is approximately slice 75, although the
control points/wm surface problem is seen throughout in this subject.
Thanks
Corinna
On Tue, May 17, 2016 at 3:46 PM, Bruce Fischl
wrote:
> Hi Corinna
>
> it's hard to tell what's going on from a single slice. If you up
The way I made the changes was that I followed the following tutorial
exactly to make the changes to the
white matter. If there is a another way not shown in the tutorial, can you
please let me know. I would greatly appreciate it.
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/WhiteMatterEd
I don't have any idea what is going wrong. I noticed that the file that it is
having problems with is here
/Users/alojos/Applications/freesurfer/subjects/sub_.dcm
Do you really keep all your dicom files in that location?
On 05/17/2016 11:47 PM, Aloi, Joseph wrote:
> Hi Doug,
> Sorry- I've a
Hello,
When running more than 3 analyses in parallel in FreeSurfer 5.3, I am
getting matlab crashes. Mathworks has politely declined to provide support
unless I can replicate outside FsFAST.
The errors are variants of
"""
OMP: Error #34: System unable to allocate necessary resources for OMP
thr
So I followed the following tutorial exactly to make the changes to the
white matter. If there is a another way not shown in the tutorial, can you
please let me know. I would greatly appreciate it.
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/WhiteMatterEdits_freev
iew
Thanks,
Gaurang Shy
ngum%22>
Wed, 18 May 2016 10:25:09 -0700
<http://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=date:20160518>
Would any member of the FreeSurfer team be able to help with this question?
I would like to use the FreeSurfer software to delineate white matter
hype
Would any member of the FreeSurfer team be able to help with this question?
I would like to use the FreeSurfer software to delineate white matter
hyperintensities. I have processed my T1 images using the recon-all command,
and in the aseg.stat file there is a value for WM hypointensities.
Is th
Also, more of the terminal output, not just the error
On 05/18/2016 12:45 PM, Clare Loane wrote:
>
> Hi - I am attempting to run Qdec on a group of patients vs controls. I
> have created the mydata.table.dat file with fsid, Group, Age, Gender
> (and separate files for Group.levels and Gender.lev
can you send a pic of the design tab?
On 05/18/2016 12:45 PM, Clare Loane wrote:
>
> Hi - I am attempting to run Qdec on a group of patients vs controls. I
> have created the mydata.table.dat file with fsid, Group, Age, Gender
> (and separate files for Group.levels and Gender.levels.
>
>
> Every
Hi - I am attempting to run Qdec on a group of patients vs controls. I have
created the mydata.table.dat file with fsid, Group, Age, Gender (and separate
files for Group.levels and Gender.levels.
Everything is loading fine but when I press 'analyze' I get an error:
Completed creation of aseg
sorry, I still don't understand. Which file are you adding white matter
to? From the image you sent it looks like you are drawing on the brain or
one of the similar ones, which is not what you should be doing. You should
load and edit the wm.mgz
cheers
Bruce
On Tue, 17 May 2016, Limachia, Ga
no, I don't think there is one. One of the many things we never
published
sorry
Bruce
On Wed, 18 May 2016, Kasper Jessen wrote:
Do you have a reference to the Schwartz atlas? I can't seem to find it.
Thanks in advance.
BestÂ
Kasper
2016-05-17 14:30 GMT+02:00 Bruce Fischl :
the sch
Do you have a reference to the Schwartz atlas? I can't seem to find it.
Thanks in advance.
Best
Kasper
2016-05-17 14:30 GMT+02:00 Bruce Fischl :
> the schwartz atlas is built from 3T data, which has somewhat different
> contrast properties due to the field-strength dependence of T1
>
> Hopefull
Hi Martin,
I am now trying to run it through the [CROSS] first, to see the effects.
However, since our longitudinal data is already edited (i.e., in the base)
i was interested to see if it was possible to pass the FLAIR in the
longitudinal runs [LONG], which already have implemented the edited [BA
Dear experts,
I use TRACULA to examine a measure (FA) at each voxel in one pathway.
pathstats.byvoxel.txt files show coordinates in native space and after
converting those the new files don't show any coordinates which are in MNI
space.
Could you tell me how can I know MNI coordinate values?
Than
Many thanks Doug.
Regards,
Nabin
On Tue, May 17, 2016 at 7:04 PM, Douglas N Greve
wrote:
> Set the threshold to be something non-zero (eg, ---thmin .0001)
>
> On 05/17/2016 10:47 AM, Nabin Koirala wrote:
> > Dear FS team,
> >
> > I am trying to find the centroid using mri_surfcluster using
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