On 1 July 2016 at 17:48, Derek Pisner wrote:
> Here is the output attachment.
Hmmm this is the actual error:
==
gcc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include/dicom
-I../xml2 -I../include/NrrdIO -DTEEM_DIO=0 -DTEEM_32BIT=0
-DTEEM_QNANHIBIT=1 -DTEEM_ENDIAN=1234 -I../jpeg -I../tiff
Hi Richard,
Sorry for the delay again. I had to get in touch with Zeke at Fs to get the
repo working (it was broken for a week)
Despite a fresh source download and following your instructions carefully, I am
still experiencing the same set of libcuda util errors upon running make.
See attached
Hi Anastasia,
Looking through the
trac-preproc and
trac-paths scripts, it is now clear to me that all the time points for a given subject have to be contained/specified
within the same dmrirc configuration file in order to implement a longitudinal TRACULA analysis. So, I've
Hi everyone,
It’s been two weeks that I’ve been facing some issues with Tracula. I hope you
could help me with that.
I run trac-all -prep -c on some DICOM files but I had the following error :
WARNING: file
/Users/ismailkoubiyr/Documents/PFE/Tracula/dti/SER_5/MR.1.2.826.0.1.3680043.6.8878.2255
For those who are interested, we have deployed a crude dynamic monitor for
freesurfer jobs running on the Open Science Grid.
It can be viewed at
http://xd-login.opensciencegrid.org/scratch/donkri/fsurfPoll.html .
The display information is in addition to that which is currently accessible
via "f
Hi Bruce,
Attached the image that show the fine conversion for the lh (on the left) and
the misaligned conversion for the rh (on the right)
[cid:9B79D24B-8ECE-46FA-889C-B7919A94C7B2]
I used the following commands:
left hemisphere, first bin:
mri_label2label --srcsubject fsaverage --srclabel
.
Hi Hinke
we need more details if you want us to help you. Images, exact command
lines and outputs, etc
cheers
Bruce
On Fri, 1 Jul 2016, Halbertsma, HN (ohk) wrote:
I’m having issues with the conversion of labels drawn in fsaverage to
subject’s space (using mri_label2label).
I’ve manuall
Hi Élodie
if you upload your subject we will take a look
cheers
Bruce
On Fri, 1 Jul 2016, Elodie
Cauvet wrote:
Dear Freesurfer list,
Sorry to bother by posting again, but I am bit stuck by this issue and would
be really glad to get some help on that issue. Of course I can upload some
data i
Dear guys,
Could I ask which value in the stats/aseg.stats represents the volume of
the cerebrum (including the subcortical structures while excluding the
ventricles and brain stem)? I'm not sure whether the
"SupraTentorialNotVent" can be the value for this measurement, and could it
be a bit bigge
On 1 July 2016 at 04:30, Dr. M. Shahid wrote:
> I have one question here. If the code compiles using sdk 7.5 or latest, will
> the resulting binary be FS v6? I wonder if the mri_ca_register_cuda code is
> also changed in v6 tree...and if mixing of binaries from different FS
> versions would not a
I’m having issues with the conversion of labels drawn in fsaverage to subject’s
space (using mri_label2label).
I’ve manually drawn labels (V1-bins) in the fsaverage brain in both the left
and right hemisphere that I want to convert to a subjects brain. I’ve
successfully managed to do this for th
Hi,
I have one question here. If the code compiles using sdk 7.5 or latest,
will the resulting binary be FS v6? I wonder if the mri_ca_register_cuda
code is also changed in v6 tree...and if mixing of binaries from different
FS versions would not affect the results that much...
Best regards,
--
S
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