[Freesurfer] hippocampus question

Dear Freesurfer, I have noticed that the subcortical grey matter volume output for the hippocampus differs slightly from other segmentation methods, I was wondering if this is due to what subfields of the hippocampus are included in the segmentation. I was curious which subfields Freesurfer includ

[Freesurfer] FW: TRACULA re-init error

Dan From: Ostrowski, Lauren Sent: Monday, August 08, 2016 4:08 PM To: Song, Daniel Subject: FW: TRACULA re-init error From: Ostrowski, Lauren Sent: Monday, August 08, 2016 4:04 PM To: Freesurfer@nmr.mgh.harvard.edu Subject: TRACU

[Freesurfer] resample structural ROI in functional space?

Hi All, I have a set of ROIs that were created in structural space, currently saved as volume masks. I would like to transform these into functional space, re-sampled to the functional resolution. Can anyone suggest a good way to do this? -kami Rhif Elusen Gofrestredig 1141565 - Registere

Re: [Freesurfer] brain mask and T1 are not the same size

I also tried on a different computer with a different operating system (Yosemite) the manual corrections for the skull stripping and the same problem persists (dimension of the modified T1 changes to 255 x 255 x 256). Any ideas regarding how I can do these modifications for those 4 particip