Re: [Freesurfer] freeview display problem

2016-09-23 Thread Ruopeng Wang
Is there any error message on the terminal? What happens if you run “glxgears” command? Does it run? Best, Ruopeng > On Sep 23, 2016, at 4:35 PM, KALEY E ELLIS wrote: > > Hello FreeSurfer Developers, > > I am attempting to open freeview to view the brainmask on a subject

Re: [Freesurfer] license.txt?

2016-09-23 Thread Z K
freeview will work without the license file but most all freesurfer binaries will NOT work without the license file. Also, it seems the registration page is working: https://surfer.nmr.mgh.harvard.edu/registration.html On 09/23/2016 01:30 PM, Trisanna Sprung-Much wrote: > Hi there > > I am

Re: [Freesurfer] Question regarding mri_convert

2016-09-23 Thread Bruce Fischl
Hi Tamara it will assume that output type given the .nii extension, so you should be fine cheers Bruce On Fri, 23 Sep 2016, Tamara Tavares wrote: Hi All, I have been using the following command line to convert my dcm/IMA files into a nii files.  mri_convert -it dicom x.dcm  .nii

[Freesurfer] Question regarding mri_convert

2016-09-23 Thread Tamara Tavares
Hi All, I have been using the following command line to convert my dcm/IMA files into a nii files. mri_convert -it dicom x.dcm .nii (where are the name of my files) I realized now that I did not specify the output file type (-ot nii) before the file name. Is this a big concern or

[Freesurfer] license.txt?

2016-09-23 Thread Trisanna Sprung-Much
Hi there I am installing Freesurfer on a Mac for the workshop next week and I cannot seem to get a license.txt because the page is no longer is accessible. However, it seems to be running fine without this file. Thoughts? Trisanna -- Ph.D. Candidate McGill University Integrated Program in